nf-core/reportho: A pipeline for comparative analysis of ortholog predictions

Orthologs are genes that arose from a single ancestral gene through speciation. As such, they provide valuable insight into the history of the species and evolutionary pressures acting on the genes. Identifying orthologs is challenging. Multiple high-quality methods have been developed to predict ortholog, but their predictions can differ strongly. Additionally, the pre-computed predictions stored in public databases have non-homogeneous formats. nf-core/reportho aims to facilitate the informed use of orthologs in research through automated data fetching, format harmonization, and reference-free performance comparison.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-10-30
DOI
https://doi.org/10.5281/zenodo.15078563
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
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article

nf-core/reportho: A pipeline for comparative analysis of ortholog predictions

Zenodo (CERN European Organization for Nuclear Research)
Genomics and Phylogenetic Studies
article

nf-core/reportho: A pipeline for comparative analysis of ortholog predictions

article en

Abstract

Orthologs are genes that arose from a single ancestral gene through speciation. As such, they provide valuable insight into the history of the species and evolutionary pressures acting on the genes. Identifying orthologs is challenging. Multiple high-quality methods have been developed to predict ortholog, but their predictions can differ strongly. Additionally, the pre-computed predictions stored in public databases have non-homogeneous formats. nf-core/reportho aims to facilitate the informed use of orthologs in research through automated data fetching, format harmonization, and reference-free performance comparison.

Zenodo (CERN European Organization for Nuclear Research)
Agriaquaculture Nutritional Genomic Center (CL), Centre for Genomic Regulation (ES)
Openalex Percentile: Top 55%
Genomics and Phylogenetic Studies
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