VHP4Safety Compound Wiki: an open science approach to collect domain specific knowledge

Poster at the International Conference on Chemical Structures, 2025, Noordwijkerhout/NL. Abstract: Collecting chemical structures is an old science. Datasets large and small are released routinely, with both open and closed licenses. Publishing these dedicated databases, however, remains a time-consuming task, often warranting a standalone research article. This work demonstrates a low-cost, open science, and scalable approach to collecting chemical structure data through a crowdsourced, continuously evolving model, providing sufficient FAIR-ness and enabling automation of much of the data curation and management. We previously presented how Wikidata stores information for around 1.5 million chemicals, and here we introduce the VHP4Safety Compound Wiki (compoundcloud.wikibase.cloud, see Figure 1), which complements Wikidata using the Wikibase software underlying Wikidata to support project-specific data. [..]

Institutions

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2025-06-02
DOI
https://doi.org/10.5281/zenodo.15877733
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
0.00
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article

VHP4Safety Compound Wiki: an open science approach to collect domain specific knowledge

Zenodo (CERN European Organization for Nuclear Research)
Scientific Computing and Data Management
article

VHP4Safety Compound Wiki: an open science approach to collect domain specific knowledge

article en

Abstract

Poster at the International Conference on Chemical Structures, 2025, Noordwijkerhout/NL. Abstract: Collecting chemical structures is an old science. Datasets large and small are released routinely, with both open and closed licenses. Publishing these dedicated databases, however, remains a time-consuming task, often warranting a standalone research article. This work demonstrates a low-cost, open science, and scalable approach to collecting chemical structure data through a crowdsourced, continuously evolving model, providing sufficient FAIR-ness and enabling automation of much of the data curation and management. We previously presented how Wikidata stores information for around 1.5 million chemicals, and here we introduce the VHP4Safety Compound Wiki (compoundcloud.wikibase.cloud, see Figure 1), which complements Wikidata using the Wikibase software underlying Wikidata to support project-specific data. [..]

Zenodo (CERN European Organization for Nuclear Research)
Leiden University (NL), Maastricht University (NL), Shell (Netherlands) (NL)
Partnerships for the goals
Openalex Percentile: Top 34%
Scientific Computing and Data Management
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VHP4Safety Compound Wiki: an open science approach to collect domain specific knowledge · Zenodo (CERN European Organization for Nuclear Research) (2025) | TGRS Research Map | TGRS