Hyper-Reliable Protein Structure Prediction via Multi-Modal Graph Convolutional Networks and Active Learning

**Abstract:** This paper introduces a novel framework, Hyper-Reliable Protein Structure Prediction (HRPSP), that significantly improves the robustness and accuracy of protein structure prediction by integrating heterogeneous data modalities through a multi-modal graph convolutional network (MM-GCN) architecture and incorporating an active learning loop guided by uncertainty quantification. HRPSP moves beyond relying solely on sequence information by leveraging structural templates, evolutionary profiles, and biophysical properties encoded within a unified graph representation. The integration of an active learning agent focuses subsequent prediction efforts on regions with high uncertainty, drastically reducing computational cost and enhancing predictive power while maintaining exceptional reliability, enabling unprecedented insights into protein function and interactions. The framework demonstrates a potential 15-20% improvement in structure prediction accuracy compared to state-of-the-art methods and facilitates personalized drug discovery pipelines.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2025-08-10
DOI
https://doi.org/10.5281/zenodo.16790401
Primary Topic
Paleopathology and ancient diseases
Type
article
Field-Weighted Citation Impact
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article

Hyper-Reliable Protein Structure Prediction via Multi-Modal Graph Convolutional Networks and Active Learning

Zenodo (CERN European Organization for Nuclear Research)
Paleopathology and ancient diseases
article

Hyper-Reliable Protein Structure Prediction via Multi-Modal Graph Convolutional Networks and Active Learning

article en

Abstract

**Abstract:** This paper introduces a novel framework, Hyper-Reliable Protein Structure Prediction (HRPSP), that significantly improves the robustness and accuracy of protein structure prediction by integrating heterogeneous data modalities through a multi-modal graph convolutional network (MM-GCN) architecture and incorporating an active learning loop guided by uncertainty quantification. HRPSP moves beyond relying solely on sequence information by leveraging structural templates, evolutionary profiles, and biophysical properties encoded within a unified graph representation. The integration of an active learning agent focuses subsequent prediction efforts on regions with high uncertainty, drastically reducing computational cost and enhancing predictive power while maintaining exceptional reliability, enabling unprecedented insights into protein function and interactions. The framework demonstrates a potential 15-20% improvement in structure prediction accuracy compared to state-of-the-art methods and facilitates personalized drug discovery pipelines.

Zenodo (CERN European Organization for Nuclear Research)
Freed–Hardeman University (US)
Openalex Percentile: Top 48%
Paleopathology and ancient diseases
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