ComputationallyEfficient Polarizable MD Simulations:A Simple Water Model for the Classical Drude Oscillator PolarizableForce Field

An improvement in the computational efficiency of polarizable force field simulations is made through the development of a polarizable Drude water model, SWM3, in combination with the use of Lennard-Jones Particle Mesh Ewald (LJPME) for the treatment of long-range LJ interactions. The experimental bulk properties, density, heat of vaporization, dielectric constant, and self-diffusion constant of the SWM3 model are accurately replicated at ambient condition. The temperature dependence of the bulk properties is also captured except for the density. Microscopic properties, such as hydration free energy, dimer properties, and binding energies of clusters are well represented. The SWM3 model is ∼40% faster than the SWM4 water model traditionally used with the Drude force field, and use of LJPME offers an additional 30% speedup in heterogeneous systems. This combination makes the SWM3-based Drude model only 2.6-fold slower than the TIP3P-based additive simulations.

Publication Details

Journal
Figshare
Published
2025-01-22
DOI
https://doi.org/10.1021/acs.jpclett.4c03451.s001
Primary Topic
Plant pathogens and resistance mechanisms
Type
article
Field-Weighted Citation Impact
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article

ComputationallyEfficient Polarizable MD Simulations:A Simple Water Model for the Classical Drude Oscillator PolarizableForce Field

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Plant pathogens and resistance mechanisms
article

ComputationallyEfficient Polarizable MD Simulations:A Simple Water Model for the Classical Drude Oscillator PolarizableForce Field

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Abstract

An improvement in the computational efficiency of polarizable force field simulations is made through the development of a polarizable Drude water model, SWM3, in combination with the use of Lennard-Jones Particle Mesh Ewald (LJPME) for the treatment of long-range LJ interactions. The experimental bulk properties, density, heat of vaporization, dielectric constant, and self-diffusion constant of the SWM3 model are accurately replicated at ambient condition. The temperature dependence of the bulk properties is also captured except for the density. Microscopic properties, such as hydration free energy, dimer properties, and binding energies of clusters are well represented. The SWM3 model is ∼40% faster than the SWM4 water model traditionally used with the Drude force field, and use of LJPME offers an additional 30% speedup in heterogeneous systems. This combination makes the SWM3-based Drude model only 2.6-fold slower than the TIP3P-based additive simulations.

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Clean water and sanitation
Openalex Percentile: Top 41%
Plant pathogens and resistance mechanisms
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