Data of MEM25

Here is the documentation annotation for files: 1_MEM25_genome.fa​​; FASTA format file containing the genome sequence of MEM25.​​ 2_MEM25_transcripts.fa; ​​FASTA format file containing the transcript sequences of MEM25.​​ 3_MEM25_cds.fa; ​​FASTA format file containing the coding sequences (CDS) of MEM25.​​ 4_MEM25_protein.fa​​; FASTA format file containing the protein sequences translated from MEM25 CDS.​​ 5_all_MEM25_genome.gff3; ​​GFF3 format file containing the structural annotations of the MEM25 genome, including genes, exons, CDS, etc.​​ 6_MEM25_miRNA.gff3​​; GFF3 format file containing the annotations of microRNAs (miRNAs) in the MEM25 genome.​​ 7_MEM25_rRNA.gff​​; GFF format file containing the annotations of ribosomal RNAs (rRNAs) in the MEM25 genome.​​ 8_MEM25_snRNA.gff3; ​​GFF3 format file containing the annotations of small nuclear RNAs (snRNAs) in the MEM25 genome.​​ 9_MEM25_tRNA.annotation.txt​​; Text file containing the annotations of transfer RNAs (tRNAs) in the MEM25 genome.​​ 10_MEM25_genome_trf.txt​​; Text file containing the annotations of tandem repeats in the MEM25 genome, identified by Tandem Repeats Finder (TRF). ​​11_function_annotation.xlsx​​; Excel file containing functional annotations of genes in MEM25.​​ 12_MEM25_expression.xlsx​​; Excel file containing the gene expression matrix of MEM25, with expression levels (e.g., FPKM) for each gene under different conditions or samples.​​ 13_Gff_containing_transcripts_of_real_RNA-seq.gff3; ​​GFF3 format file containing transcript annotations derived from real RNA-seq data.​​ 14_Metabolome.xlsx; ​​Excel file containing metabolomics data for MEM25, including metabolite annotations and abundance matrices.​​ 15_Orthogroups_GeneCount.xlsx; ​​Excel file containing the gene counts for each orthogroup (gene family) across 46 species.​​ 16_Orthogroups_genes.tsv; ​​TSV (tab-separated values) file containing the specific gene IDs for each orthogroup (gene family) in different species.​​ 17_Gene_families_of_MEM25_FACHB_9_expression.xlsx; ​​Excel file containing the expression matrix of gene families shared between MEM25 and FACHB-9.​​ 18_Correlation_between_gene_expression_and_metabolites.xlsx; ​​Excel file containing Pearson correlation analysis results between key gene families and key metabolites. ​​19_hic.hic​​; Hi-C data file in .hic format, which can be visualized and analyzed using Juicebox to study the 3D architecture of the MEM25 genome. 198_samples_vcf.zip; Mutation detection results of MEM25 mutant in vcf format. 46.species.tree.nwk is the evolutionary tree file of 46 species.