Draft genome assembly for the purple-hinged rock scallop (<i>Crassadoma gigantea</i>)

This genomic sequence for the purple-hinged rock scallop, <i>Crassadoma gigantea</i>, is a substantial improvement over currently available NCBI genomes for the species and will be an important resource for future genomic research, including ongoing and future population genetic studies. Purple-hinged rock scallops are found along the west coast of North America with a native range from Northern Alaska to Northern Mexico and found to depths of up to ~ 50 m. While not commercially harvested, this species is harvested recreationally and is a candidate of interest for aquaculture and conservation. The draft genome for C. gigantea is 817.3 MB, containing 7,183 scaffolds (contig N50 = 287.9 Kb, scaffold N50 = 965.5 Kb). Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis using the 5295 genes in the mollusca_odb10 database had a 93.3% completeness value (92.7% single, 0.6% duplicated). Repeat elements made up 32.23% of the genome. MetaEuk reference-based discovery identified and annotated 23,409 unique protein sequences. Functional annotation was completed by Pannzer2. This assembly will contribute to the ongoing population genetic research on this species.

Publication Details

Journal
Figshare
Published
2024-10-16
DOI
https://doi.org/10.6084/m9.figshare.27237210
Primary Topic
History and advancements in chemistry
Type
article
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article

Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea)

Figshare
History and advancements in chemistry
article

Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea)

article en

Abstract

This genomic sequence for the purple-hinged rock scallop, <i>Crassadoma gigantea</i>, is a substantial improvement over currently available NCBI genomes for the species and will be an important resource for future genomic research, including ongoing and future population genetic studies. Purple-hinged rock scallops are found along the west coast of North America with a native range from Northern Alaska to Northern Mexico and found to depths of up to ~ 50 m. While not commercially harvested, this species is harvested recreationally and is a candidate of interest for aquaculture and conservation. The draft genome for C. gigantea is 817.3 MB, containing 7,183 scaffolds (contig N50 = 287.9 Kb, scaffold N50 = 965.5 Kb). Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis using the 5295 genes in the mollusca_odb10 database had a 93.3% completeness value (92.7% single, 0.6% duplicated). Repeat elements made up 32.23% of the genome. MetaEuk reference-based discovery identified and annotated 23,409 unique protein sequences. Functional annotation was completed by Pannzer2. This assembly will contribute to the ongoing population genetic research on this species.

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Life below water
Openalex Percentile: Top 49%
History and advancements in chemistry
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