CAdir: Fast Clustering and Visualization of Single-Cell Transcriptomics Data by Direction in CA Space

Here we provide the the code as well as all data sets required to replicate the results of the paper "CAdir: Fast Clustering and Visualization of Single-Cell Transcriptomics Data by Direction in CA Space" by Clemens Kohl and Martin Vingron. The files are organized as follows: results: Code to reproduce all figures and results shown in the manuscript. benchmarking: Scripts to run the benchmarking comparisons. The scripts are designed for the computational environment of the Max Planck Institute for Molecular Genetics and likely have to be adapted to be used in other environments. data: All data sets required to run the benchmarking and reproduce the results. preprocessing: Scripts to preprocess the data. download_raw_data: Scripts to download raw data sets if required. renv.lock: Exact Package Versions used. The packages can be installed with the correct version using the R package "renv"