A Review of Biotic Interactions and Taxon Names Found in globalbioticinteractions/seinet hash://md5/9ba4ec70e4b75d9d63c904eb2167fd1b

Introduction Data Review and Archive Data review and archiving can be a time-consuming process, especially when done manually. This review report aims to help facilitate both activities. It automates the archiving of datasets, including Darwin Core archives, and is a citable backup of a version of the dataset. Additionally, an automatic review of species interaction claims made in the dataset is generated and registered with Global Biotic Interactions (J. H. Poelen, Simons, and Mungall 2014). This review includes summary statistics about, and observations about, the dataset under review: ARIZ DwC-Archive | Darwin Core Archive for University of Arizona Herbarium https://swbiodiversity.org/seinet/content/dwca/ARIZ_DwC-A.zip 2025-04-12T10:32:47.444Z ASC DwC-Archive | Darwin Core Archive for Deaver Herbarium (Northern Arizona University) https://swbiodiversity.org/seinet/content/dwca/ASC_DwC-A.zip 2025-04-12T10:32:47.444Z ASDM DwC-Archive | Darwin Core Archive for Arizona-Sonora Desert Museum https://swbiodiversity.org/seinet/content/dwca/ASDM_DwC-A.zip 2025-04-12T10:32:47.444Z ASU-CCH DwC-Archive | Darwin Core Archive for Cochise County Herbarium - Arizona State University https://swbiodiversity.org/seinet/content/dwca/ASU-CCH_DwC-A.zip 2025-04-12T10:32:47.444Z ASU-Plants DwC-Archive | Darwin Core Archive for Arizona State University Vascular Plant Herbarium https://swbiodiversity.org/seinet/content/dwca/ASU-Plants_DwC-A.zip 2025-04-12T10:32:47.444Z AWC DwC-Archive | Darwin Core Archive for Arizona Western College Herbarium https://swbiodiversity.org/seinet/content/dwca/AWC_DwC-A.zip 2025-04-12T10:32:47.444Z BLM-LCDO DwC-Archive | Darwin Core Archive for Bureau of Land Management, Las Cruces District Office https://swbiodiversity.org/seinet/content/dwca/BLM-LCDO_DwC-A.zip 2025-04-12T10:32:47.444Z BLM-NM DwC-Archive | Darwin Core Archive for Bureau of Land Management - New Mexico State Offices https://swbiodiversity.org/seinet/content/dwca/BLM-NM_DwC-A.zip 2025-04-12T10:32:47.444Z BTA-Plants DwC-Archive | Darwin Core Archive for Boyce Thompson Arboretum https://swbiodiversity.org/seinet/content/dwca/BTA-Plants_DwC-A.zip 2025-04-12T10:32:47.444Z DES DwC-Archive | Darwin Core Archive for Desert Botanical Garden Herbarium https://swbiodiversity.org/seinet/content/dwca/DES_DwC-A.zip 2025-04-12T10:32:47.444Z ENMU DwC-Archive | Darwin Core Archive for Eastern New Mexico University Herbarium https://swbiodiversity.org/seinet/content/dwca/ENMU_DwC-A.zip 2025-04-12T10:32:47.444Z KAIB DwC-Archive | Darwin Core Archive for Kaibab National Forest Herbarium https://swbiodiversity.org/seinet/content/dwca/KAIB_DwC-A.zip 2025-04-12T10:32:47.444Z MNA DwC-Archive | Darwin Core Archive for Museum of Northern Arizona https://swbiodiversity.org/seinet/content/dwca/MNA_DwC-A.zip 2025-04-12T10:32:47.444Z NAVA DwC-Archive | Darwin Core Archive for Navajo Nation Herbarium https://swbiodiversity.org/seinet/content/dwca/NAVA_DwC-A.zip 2025-04-12T10:32:47.444Z NEON-APLC-HVCH DwC-Archive | Darwin Core Archive for ASU-NEON Aquatic Plant, Bryophyte, and Macroalgae Collection (Herbarium Vouchers [Clip Harvests]) https://swbiodiversity.org/seinet/content/dwca/NEON-APLC-HVCH_DwC-A.zip 2025-04-12T10:32:47.444Z NEON-APLC-HVPC DwC-Archive | Darwin Core Archive for ASU-NEON Aquatic Plant, Bryophyte, and Macroalgae Collection (Herbarium Vouchers [Point Counts]) https://swbiodiversity.org/seinet/content/dwca/NEON-APLC-HVPC_DwC-A.zip 2025-04-12T10:32:47.444Z NEON-APLC-HVSS DwC-Archive | Darwin Core Archive for ASU-NEON Aquatic Plant, Bryophyte, and Macroalgae Collection (Herbarium Vouchers [Standard Sampling]) https://swbiodiversity.org/seinet/content/dwca/NEON-APLC-HVSS_DwC-A.zip 2025-04-12T10:32:47.444Z NEON-TPLC-HV DwC-Archive | Darwin Core Archive for ASU-NEON Terrestrial Plant Collection (Herbarium Vouchers) https://swbiodiversity.org/seinet/content/dwca/NEON-TPLC-HV_DwC-A.zip 2025-04-12T10:32:47.444Z NHI DwC-Archive | Darwin Core Archive for Natural History Institute Herbarium https://swbiodiversity.org/seinet/content/dwca/NHI_DwC-A.zip 2025-04-12T10:32:47.444Z SFBG DwC-Archive | Darwin Core Archive for Santa Fe Botanical Garden Herbarium https://swbiodiversity.org/seinet/content/dwca/SFBG_DwC-A.zip 2025-04-12T10:32:47.444Z SJNM DwC-Archive | Darwin Core Archive for San Juan College Herbarium https://swbiodiversity.org/seinet/content/dwca/SJNM_DwC-A.zip 2025-04-12T10:32:47.444Z SNM DwC-Archive | Darwin Core Archive for Western New Mexico University, Dale A. Zimmerman Herbarium https://swbiodiversity.org/seinet/content/dwca/SNM_DwC-A.zip 2025-04-12T10:32:47.444Z SWRS DwC-Archive | Darwin Core Archive for Southwestern Research Station https://swbiodiversity.org/seinet/content/dwca/SWRS_DwC-A.zip 2025-04-12T10:32:47.444Z UNM-Vascular Plants DwC-Archive | Darwin Core Archive for University of New Mexico Herbarium https://swbiodiversity.org/seinet/content/dwca/UNM-VascularPlants_DwC-A.zip 2025-04-12T10:32:47.444Z USFS-COCAZ DwC-Archive | Darwin Core Archive for Coconino National Forest Herbarium https://swbiodiversity.org/seinet/content/dwca/USFS-COCAZ_DwC-A.zip 2025-04-12T10:32:47.444Z USFS-GILA DwC-Archive | Darwin Core Archive for Gila National Forest Herbarium https://swbiodiversity.org/seinet/content/dwca/USFS-GILA_DwC-A.zip 2025-04-12T10:32:47.444Z USFS-PNF DwC-Archive | Darwin Core Archive for Prescott National Forest Herbarium https://swbiodiversity.org/seinet/content/dwca/USFS-PNF_DwC-A.zip 2025-04-12T10:32:47.444Z USFS-SWRH DwC-Archive | Darwin Core Archive for Southwestern Regional Forest Service Herbarium https://swbiodiversity.org/seinet/content/dwca/USFS-SWRH_DwC-A.zip 2025-04-12T10:32:47.444Z USFS-TNF DwC-Archive | Darwin Core Archive for US Forest Service - Tonto National Forest https://swbiodiversity.org/seinet/content/dwca/USFS-TNF_DwC-A.zip 2025-04-12T10:32:47.444Z hash://md5/9ba4ec70e4b75d9d63c904eb2167fd1b For additional metadata related to this dataset, please visit https://github.com/globalbioticinteractions/seinet and inspect associated metadata files including, but not limited to, README.md, eml.xml, and/or globi.json. Methods The review is performed through programmatic scripts that leverage tools like Preston (Elliott et al. 2025), Elton (Kuhn, Poelen, and Leinweber 2025), Nomer (Salim and Poelen 2025), globinizer (J. Poelen, Seltmann, and Mietchen 2024) combined with third-party tools like grep, mlr, tail and head. Tools used in this review process tool name version preston 0.10.1 elton 0.15.9 nomer 0.5.13 globinizer 0.4.0 mlr 6.0.0 jq 1.6 yq 4.25.3 pandoc 3.1.6.1 The review process can be described in the form of the script below 1. # get versioned copy of the dataset (size approx. 308MiB) under review elton pull globalbioticinteractions/seinet # generate review notes elton review globalbioticinteractions/seinet\ > review.tsv # export indexed interaction records elton interactions globalbioticinteractions/seinet\ > interactions.tsv # export names and align them with the Catalogue of Life using Nomer elton names globalbioticinteractions/seinet\ | nomer append col\ > name-alignment.tsv or visually, in a process diagram. Review Process Overview You can find a copy of the full review script at check-data.sh. See also GitHub and Codeberg. Results In the following sections, the results of the review are summarized 2. Then, links to the detailed review reports are provided. Files The following files are produced in this review: filename description biblio.bib list of bibliographic reference of this review check-dataset.sh data review workflow/process as expressed in a bash script data.zip a versioned Preston (Elliott et al. 2025) archive of the data under review HEAD the digital signature of the data under review index.docx review in MS Word format index.html review in HTML format index.md review in Pandoc markdown format index.pdf review in PDF format indexed-citations.csv.gz list of distinct reference citations for reviewed species interaction claims in gzipped comma-separated values file format indexed-citations.html.gz list of distinct reference citations for reviewed species interactions claims in gzipped html file format indexed-citations.tsv.gz list of distinct reference citations for reviewed species interaction claims in gzipped tab-separated values format indexed-interactions-col-family-col-family.svg network diagram showing the taxon family to taxon family interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) indexed-interactions-col-kingdom-col-kingdom.svg network diagram showing the taxon kingdom to taxon kingom interaction claims in the dataset under review as interpreted by the Catalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) indexed-interactions.csv.gz species interaction claims indexed from the dataset under review in gzipped comma-separated values format indexed-interactions.html.gz species interaction claims indexed from the dataset under review in gzipped html format indexed-interactions.tsv.gz species interaction claims indexed from the dataset under review in gzipped tab-separated values format indexed-interactions-sample.csv list of species interaction claims indexed from the dataset under review in gzipped comma-separated values format indexed-interactions-sample.html first 500 species interaction claims indexed from the dataset under review in html format indexed-interactions-sample.tsv first 500 species interaction claims indexed from the dataset under review in tab-separated values format indexed-names.csv.gz taxonomic names indexed from the dataset under review in gzipped comma-separated values format indexed-names.html.gz taxonomic names found in the dataset under review in gzipped html format indexed-names.tsv.gz taxonomic names found in the dataset un