Hyper-Resolution Protein Folding Prediction via Adaptive Graph Neural Network Fusion with Temporal Dynamics

**Abstract:** Current protein folding prediction methods struggle with accurately modeling the interplay of long-range interactions and temporal dynamics crucial for precise three-dimensional structure determination. This research proposes a novel approach – Adaptive Graph Neural Network Fusion with Temporal Dynamics (AGNTD) – that leverages a dynamically evolving graph structure alongside a fusion of multiple Graph Neural Networks (GNNs) to achieve significantly improved prediction accuracy and resolution compared to existing state-of-the-art models. AGNTD adapts its graph representation based on predicted topological features, enabling efficient capture of nuanced inter-residue relationships. Furthermore, a recurrent GNN architecture infuses temporal information, accounting for folding pathway dependencies. We demonstrate a 10x improvement in prediction accuracy for globular proteins and pave the way for accelerated drug discovery and materials science applications.

Institutions

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2025-08-16
DOI
https://doi.org/10.5281/zenodo.16886746
Primary Topic
Machine Learning in Bioinformatics
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Hyper-Resolution Protein Folding Prediction via Adaptive Graph Neural Network Fusion with Temporal Dynamics

Zenodo (CERN European Organization for Nuclear Research)
Machine Learning in Bioinformatics
article

Hyper-Resolution Protein Folding Prediction via Adaptive Graph Neural Network Fusion with Temporal Dynamics

article en

Abstract

**Abstract:** Current protein folding prediction methods struggle with accurately modeling the interplay of long-range interactions and temporal dynamics crucial for precise three-dimensional structure determination. This research proposes a novel approach – Adaptive Graph Neural Network Fusion with Temporal Dynamics (AGNTD) – that leverages a dynamically evolving graph structure alongside a fusion of multiple Graph Neural Networks (GNNs) to achieve significantly improved prediction accuracy and resolution compared to existing state-of-the-art models. AGNTD adapts its graph representation based on predicted topological features, enabling efficient capture of nuanced inter-residue relationships. Furthermore, a recurrent GNN architecture infuses temporal information, accounting for folding pathway dependencies. We demonstrate a 10x improvement in prediction accuracy for globular proteins and pave the way for accelerated drug discovery and materials science applications.

Zenodo (CERN European Organization for Nuclear Research)
Freed–Hardeman University (US)
Openalex Percentile: Top 53%
Machine Learning in Bioinformatics
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.