eDNAqua-Plan Deliverable 7: Report on eDNA data repositories

This report contains an inventory of the ongoing and completed environmental DNA (eDNA)initiatives and repositories, identifying their geographical, ecological and taxonomiccoverages. It includes a brief description of the methodologies used to perform theinventorying.The inventory was sought in three different ways: Manual review of 29 resources (eDNA and reference libraries) by the bioinformaticsteam for 40 properties. A questionnaire sent out to eDNA research teams, for which(60) responses wereneatly collated. Automated(LLM) mining of scientific papers This inventory allowed us to obtain a good overview of the current initiatives and databasesbeing used for eDNA data sharing and publication and to identify the main gaps and areasfor improvement.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-10-07
DOI
https://doi.org/10.5281/zenodo.15168646
Primary Topic
Environmental DNA in Biodiversity Studies
Type
article
Field-Weighted Citation Impact
0.00
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article

eDNAqua-Plan Deliverable 7: Report on eDNA data repositories

Zenodo (CERN European Organization for Nuclear Research)
Environmental DNA in Biodiversity Studies
article

eDNAqua-Plan Deliverable 7: Report on eDNA data repositories

article en

Abstract

This report contains an inventory of the ongoing and completed environmental DNA (eDNA)initiatives and repositories, identifying their geographical, ecological and taxonomiccoverages. It includes a brief description of the methodologies used to perform theinventorying.The inventory was sought in three different ways: Manual review of 29 resources (eDNA and reference libraries) by the bioinformaticsteam for 40 properties. A questionnaire sent out to eDNA research teams, for which(60) responses wereneatly collated. Automated(LLM) mining of scientific papers This inventory allowed us to obtain a good overview of the current initiatives and databasesbeing used for eDNA data sharing and publication and to identify the main gaps and areasfor improvement.

Zenodo (CERN European Organization for Nuclear Research)
European Bioinformatics Institute (GB), Norwegian Institute for Water Research (NO), University of Łódź (PL), Centre for Australian National Biodiversity Research (AU), AgroBio (BR), Instituut voor Landbouw en Visserijonderzoek (BE), Eternity Bioscience (United States) (US), University of Minho (PT)
Openalex Percentile: Top 55%
Environmental DNA in Biodiversity Studies
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