Protocol for delineating tree ring and sapwood boundaries from various conditions of stem images

#'@Title: Delineation of tree ring and sapwood boundaries from various conditions of stem images #'@Description#' The detection codes are demonstrated separately into #' "CT images" and "Printer Scanner".#' Their primary codes are the same #' but with some adjustments based on the image's resolution.#' Please follow the specific protocol in each folder for more specified info. #'@ImageDescription:#'@Resolution#' (1) CT Image: 150 um#' (2) Printer Scanner: 600 dpi (~42.33 microns)#'@note#' As the code is defined for the greyscale computation,#' If the Printer images are color images, make sure to convert it. #'@Platform#'@Softwares#' (1) ImageJ (Fiji)#' (2) R#'@note#' Please cite plugins and libraries used in above platforms accordingly.#' It is really important to respect great efforts in the scientific field. #'@Requirements for computation#'@[For TreeRing & Pith]#' (1) Stem Disc Images.tif#' (2) Outer Ring Mask.tif (marked in ImageJ)#'@[For Sapwood]#' (1) Stem Disc Images with Sapwood pattern.tif#' (2) Outer Ring Mask.tif (marked in ImageJ)

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-10-23
DOI
https://doi.org/10.5281/zenodo.13981420
Primary Topic
Wood and Agarwood Research
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Protocol for delineating tree ring and sapwood boundaries from various conditions of stem images

Zenodo (CERN European Organization for Nuclear Research)
Wood and Agarwood Research
article

Protocol for delineating tree ring and sapwood boundaries from various conditions of stem images

article en

Abstract

#'@Title: Delineation of tree ring and sapwood boundaries from various conditions of stem images #'@Description#' The detection codes are demonstrated separately into #' "CT images" and "Printer Scanner".#' Their primary codes are the same #' but with some adjustments based on the image's resolution.#' Please follow the specific protocol in each folder for more specified info. #'@ImageDescription:#'@Resolution#' (1) CT Image: 150 um#' (2) Printer Scanner: 600 dpi (~42.33 microns)#'@note#' As the code is defined for the greyscale computation,#' If the Printer images are color images, make sure to convert it. #'@Platform#'@Softwares#' (1) ImageJ (Fiji)#' (2) R#'@note#' Please cite plugins and libraries used in above platforms accordingly.#' It is really important to respect great efforts in the scientific field. #'@Requirements for computation#'@[For TreeRing & Pith]#' (1) Stem Disc Images.tif#' (2) Outer Ring Mask.tif (marked in ImageJ)#'@[For Sapwood]#' (1) Stem Disc Images with Sapwood pattern.tif#' (2) Outer Ring Mask.tif (marked in ImageJ)

Zenodo (CERN European Organization for Nuclear Research)
Openalex Percentile: Top 62%
Wood and Agarwood Research
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.