ntRoot: Scalable Ancestry Predictions from Genome Sequencing Data

We present ntRoot, an alignment-free and computationally lightweight framework for inferring human super-population-level global and local ancestry from whole genome assemblies or raw sequencing data types, and demonstrate its utility on over 300, Simon Genome Diversity Project and 1000 Genomes Project datasets. ntRoot is available from https://github.com/bcgsc/ntRoot. A preprint describing the technology is accessible at https://doi.org/10.1101/2024.03.26.586646

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-09-26
DOI
https://doi.org/10.5281/zenodo.13844277
Primary Topic
Genetic Associations and Epidemiology
Type
article
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article

ntRoot: Scalable Ancestry Predictions from Genome Sequencing Data

Zenodo (CERN European Organization for Nuclear Research)
Genetic Associations and Epidemiology
article

ntRoot: Scalable Ancestry Predictions from Genome Sequencing Data

article en

Abstract

We present ntRoot, an alignment-free and computationally lightweight framework for inferring human super-population-level global and local ancestry from whole genome assemblies or raw sequencing data types, and demonstrate its utility on over 300, Simon Genome Diversity Project and 1000 Genomes Project datasets. ntRoot is available from https://github.com/bcgsc/ntRoot. A preprint describing the technology is accessible at https://doi.org/10.1101/2024.03.26.586646

Zenodo (CERN European Organization for Nuclear Research)
Baptist Cancer Center (US), Canada's Michael Smith Genome Sciences Centre (CA), Paññāsāstra University of Cambodia (KH)
Openalex Percentile: Top 53%
Genetic Associations and Epidemiology
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