Sparse Deep Learning for Cell Type Classification in Breast Cancer Using Multiplex Imaging

Imaging Mass Cytometry (IMC) is an important imaging technology for breast cancer research. However, there is still a lack of research on the development of efficient deep learning algorithms for classification of cell types based on IMC data. In this study, we propose a sparse deep learning approach and assess the importance of antibody markers that contribute to cell classification. The results of the experiment show that the key markers we identified align closely with those traditionally used for manual cell classification, which provide tremendous potential for future biological research.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-09-04
DOI
https://doi.org/10.5281/zenodo.13152363
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
0.00
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article

Sparse Deep Learning for Cell Type Classification in Breast Cancer Using Multiplex Imaging

Zenodo (CERN European Organization for Nuclear Research)
Single-cell and spatial transcriptomics
article

Sparse Deep Learning for Cell Type Classification in Breast Cancer Using Multiplex Imaging

article en

Abstract

Imaging Mass Cytometry (IMC) is an important imaging technology for breast cancer research. However, there is still a lack of research on the development of efficient deep learning algorithms for classification of cell types based on IMC data. In this study, we propose a sparse deep learning approach and assess the importance of antibody markers that contribute to cell classification. The results of the experiment show that the key markers we identified align closely with those traditionally used for manual cell classification, which provide tremendous potential for future biological research.

Zenodo (CERN European Organization for Nuclear Research)
University of Manchester (GB)
Openalex Percentile: Top 58%
Single-cell and spatial transcriptomics
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