Data and code for "Image-based force inference by biomechanical simulation"

The data in this folder accompanies the paper: Image-based force inference by biomechanical simulation workspace-code-data A snapshot of the codebase, which will be maintained at https://bitbucket.org/pgmsembryogenesis/fides Docker installation guide and examples Most raw input / output data of the embryo time lapses. Includes STL and VTP meshes, intermediate TXT and CSV results, etc. mpactsimage.tar.gz Docker image needed to run the simulation code (instructions in workspace) inferred data Summaries and aggregates of all inferences, used for several of the plots ablation data Raw images of the ablation experiments Summarized ablation results and plots raw_membrane_images Microscopy images of membrane marker for cell shape segmentation raw_protein_images Microscopy images of actin, myosin, and cadherin fluorescence simulation videos A couple videos showing the DCM simulations and embryo time-lapses