RNA sequencing scripts for Wechsler et. al 2025

Scripts for RNA-seq read processing and counting pipeline and R codes for differentially expression analysis. "Snakefile" is the script to run the RNA-seq read processing and counting pipeline on the Snakemake. "DEanalysis.Rmd" is the R notebook for the differentially expression analysis. The other files were used to run the Snakefile.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2025-04-02
DOI
https://doi.org/10.5281/zenodo.15127156
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
0.00
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article

RNA sequencing scripts for Wechsler et. al 2025

Zenodo (CERN European Organization for Nuclear Research)
Single-cell and spatial transcriptomics
article

RNA sequencing scripts for Wechsler et. al 2025

article en

Abstract

Scripts for RNA-seq read processing and counting pipeline and R codes for differentially expression analysis. "Snakefile" is the script to run the RNA-seq read processing and counting pipeline on the Snakemake. "DEanalysis.Rmd" is the R notebook for the differentially expression analysis. The other files were used to run the Snakefile.

Zenodo (CERN European Organization for Nuclear Research)
University of California, Davis (US)
Openalex Percentile: Top 54%
Single-cell and spatial transcriptomics
DOIOpen Access PDFOpenAlex
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RNA sequencing scripts for Wechsler et. al 2025 · Zenodo (CERN European Organization for Nuclear Research) (2025) | TGRS Research Map | TGRS