Protocol C: Automated segmentation of the otic vesicle and image analysis.

This protocol details the automated segmentation of the otic vesicle and image analysis. MaterialsFor this protocol, you will need the following scripts and software: Docker and the docker image (docker pull branhongweili/dqbm_cell_seg:v3.1) to run the pre-trained segmentation model.Depending on the operating system, either use the segmentation.shshell script (for MacOS/Ubuntu) or the segmentation.ps1PowerShell script (for Windows).An installation of FIJI.The check_measure.py script.

Publication Details

Journal
Figshare
Published
2024-08-08
DOI
https://doi.org/10.1371/journal.pone.0304827.s004
Primary Topic
Mycorrhizal Fungi and Plant Interactions
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Protocol C: Automated segmentation of the otic vesicle and image analysis.

Figshare
Mycorrhizal Fungi and Plant Interactions
article

Protocol C: Automated segmentation of the otic vesicle and image analysis.

article en

Abstract

This protocol details the automated segmentation of the otic vesicle and image analysis. MaterialsFor this protocol, you will need the following scripts and software: Docker and the docker image (docker pull branhongweili/dqbm_cell_seg:v3.1) to run the pre-trained segmentation model.Depending on the operating system, either use the segmentation.shshell script (for MacOS/Ubuntu) or the segmentation.ps1PowerShell script (for Windows).An installation of FIJI.The check_measure.py script.

Figshare
Openalex Percentile: Top 47%
Mycorrhizal Fungi and Plant Interactions
DOIOpen Access PDFOpenAlex
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Protocol C: Automated segmentation of the otic vesicle and image analysis. · Figshare (2024) | TGRS Research Map | TGRS