Summary of inferred core GRN motif interactions (ITWT versus RTM).

<p>The central component of our inference scheme is the sequential neural posterior estimation (SNPE) algorithm. Both unconditional (top row [A, B]) and conditional (bottom row [C, D]) posterior parameter distributions were obtained following 8 consecutive rounds of inference. 800 thousand composite simulations were performed for the inferred-theoretical wild-type (ITWT) system (left column [A, C]). For the reinferred-theoretical mutant (RTM) system (right column [B, D]), 4 consecutive rounds of inference were performed producing 400 thousand simulations. For complete details of the model parameter inference procedure, see Model parameter inference framework. <b>[A, B]</b> Model parameter posterior distribution. For ease of visualization, we only show the one-dimensional projection of all posterior components representing the core GRN motif interactions. <b>[C, D]</b> First assessment of model parameter sensitivity. These panels show the same components as in [A, B] but the posterior is now conditioned on the maximum-a-posteriori probability (MAP) estimate of the model parameters.</p> <p>(PDF)</p>

Publication Details

Journal
Figshare
Published
2024-11-14
DOI
https://doi.org/10.1371/journal.pcbi.1012473.s002
Primary Topic
Mycorrhizal Fungi and Plant Interactions
Type
article
Field-Weighted Citation Impact
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article

Summary of inferred core GRN motif interactions (ITWT versus RTM).

Figshare
Mycorrhizal Fungi and Plant Interactions
article

Summary of inferred core GRN motif interactions (ITWT versus RTM).

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Abstract

<p>The central component of our inference scheme is the sequential neural posterior estimation (SNPE) algorithm. Both unconditional (top row [A, B]) and conditional (bottom row [C, D]) posterior parameter distributions were obtained following 8 consecutive rounds of inference. 800 thousand composite simulations were performed for the inferred-theoretical wild-type (ITWT) system (left column [A, C]). For the reinferred-theoretical mutant (RTM) system (right column [B, D]), 4 consecutive rounds of inference were performed producing 400 thousand simulations. For complete details of the model parameter inference procedure, see Model parameter inference framework. <b>[A, B]</b> Model parameter posterior distribution. For ease of visualization, we only show the one-dimensional projection of all posterior components representing the core GRN motif interactions. <b>[C, D]</b> First assessment of model parameter sensitivity. These panels show the same components as in [A, B] but the posterior is now conditioned on the maximum-a-posteriori probability (MAP) estimate of the model parameters.</p> <p>(PDF)</p>

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Mycorrhizal Fungi and Plant Interactions
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