Structure and\nDynamics of ATP and the ATP–Zn<sup>2+</sup> Complex in Solution

Despite the crucial role of ATP in life and artificial\nlife-like\napplications, fundamental aspects relevant to its function, such as\nits conformational properties and its interaction with water and ions,\nremain unclear. Here, by integrating linear and two-dimensional infrared\nspectroscopy with <i>ab initio</i> molecular dynamics, we\nprovide a detailed characterization of the vibrational spectra of\nthe phosphate groups in ATP and in its complex with Zn<sup>2+</sup> in water. Our study highlights the role of conformational disorder\nand solvation dynamics, beyond the harmonic normal-mode analysis,\nand reveals a complex scenario in which electronic and environmental\neffects tune the coupling between phosphate vibrations. We identify\nβγ-bidentate and αβγ-tridentate modes\nas the preferential coordination modes of Zn<sup>2+</sup>, as was\nproposed in the literature for Mg<sup>2+</sup>, although this conclusion\nis reached by a different spectral interpretation.

Publication Details

Journal
Figshare
Published
2024-09-26
DOI
https://doi.org/10.1021/acs.jpclett.4c02296.s001
Primary Topic
Mycorrhizal Fungi and Plant Interactions
Type
article
Field-Weighted Citation Impact
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Structure and\nDynamics of ATP and the ATP–Zn2+ Complex in Solution

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Mycorrhizal Fungi and Plant Interactions
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Structure and\nDynamics of ATP and the ATP–Zn2+ Complex in Solution

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Abstract

Despite the crucial role of ATP in life and artificial\nlife-like\napplications, fundamental aspects relevant to its function, such as\nits conformational properties and its interaction with water and ions,\nremain unclear. Here, by integrating linear and two-dimensional infrared\nspectroscopy with <i>ab initio</i> molecular dynamics, we\nprovide a detailed characterization of the vibrational spectra of\nthe phosphate groups in ATP and in its complex with Zn<sup>2+</sup> in water. Our study highlights the role of conformational disorder\nand solvation dynamics, beyond the harmonic normal-mode analysis,\nand reveals a complex scenario in which electronic and environmental\neffects tune the coupling between phosphate vibrations. We identify\nβγ-bidentate and αβγ-tridentate modes\nas the preferential coordination modes of Zn<sup>2+</sup>, as was\nproposed in the literature for Mg<sup>2+</sup>, although this conclusion\nis reached by a different spectral interpretation.

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Mycorrhizal Fungi and Plant Interactions
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