Revision of the FormycinA and Pyrazofurin BiosyntheticPathways Reveals Specificity for d‑Glutamic Acid anda Cryptic <i>N</i>‑Acylation Step During PyrazoleCore Formation

Formycin A and pyrazofurin are two naturally occurring pyrazole-derived <i>C</i>-nucleosides with antibacterial and antiviral activities. While earlier studies have established the chemistry of <i>C</i>-glycosidic bond formation as well as the subsequent steps in the biosynthesis of formycin A and pyrazofurin, how the pyrazole ring itself is constructed remains elusive. While N–N bond formation in the pyrazole ring was previously reported to involve coupling of <i>N</i><sup>6</sup>-hydroxylated l-lysine and l-glutamic acid catalyzed by the hydrazine synthetase PyfG, herein PyfG and its homologue ForJ are shown instead to recognize d-glutamate instead of l-glutamate. The hydrazine product of ForJ/PyfG catalysis then releases α-hydrazino d-glutamic acid upon processing by the NAD-dependent oxidoreductase ForL. Furthermore, <i>N</i>-acylation of α-hydrazino d-glutamate with an amino acid catalyzed by the ATP-grasp ligase ForM/PyfJ is indispensable for recognition by the FAD-dependent oxidoreductase ForR/PyfK to perform dehydrogenation of the Cα–N bond and thereby form a hydrazone intermediate. This work not only demonstrates that d-glutamic acid is the correct substrate for hydrazine biosynthesis but also reveals a cryptic <i>N</i>-acylation step in the assembly of the pyrazole core. These results thus provide significant insights into the biosynthesis of pyrazole rings that are rarely seen in natural products.

Publication Details

Journal
Figshare
Published
2025-03-19
DOI
https://doi.org/10.1021/jacs.5c01277.s001
Primary Topic
Mycorrhizal Fungi and Plant Interactions
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article
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article

Revision of the FormycinA and Pyrazofurin BiosyntheticPathways Reveals Specificity for d‑Glutamic Acid anda Cryptic N‑Acylation Step During PyrazoleCore Formation

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Mycorrhizal Fungi and Plant Interactions
article

Revision of the FormycinA and Pyrazofurin BiosyntheticPathways Reveals Specificity for d‑Glutamic Acid anda Cryptic N‑Acylation Step During PyrazoleCore Formation

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Abstract

Formycin A and pyrazofurin are two naturally occurring pyrazole-derived <i>C</i>-nucleosides with antibacterial and antiviral activities. While earlier studies have established the chemistry of <i>C</i>-glycosidic bond formation as well as the subsequent steps in the biosynthesis of formycin A and pyrazofurin, how the pyrazole ring itself is constructed remains elusive. While N–N bond formation in the pyrazole ring was previously reported to involve coupling of <i>N</i><sup>6</sup>-hydroxylated l-lysine and l-glutamic acid catalyzed by the hydrazine synthetase PyfG, herein PyfG and its homologue ForJ are shown instead to recognize d-glutamate instead of l-glutamate. The hydrazine product of ForJ/PyfG catalysis then releases α-hydrazino d-glutamic acid upon processing by the NAD-dependent oxidoreductase ForL. Furthermore, <i>N</i>-acylation of α-hydrazino d-glutamate with an amino acid catalyzed by the ATP-grasp ligase ForM/PyfJ is indispensable for recognition by the FAD-dependent oxidoreductase ForR/PyfK to perform dehydrogenation of the Cα–N bond and thereby form a hydrazone intermediate. This work not only demonstrates that d-glutamic acid is the correct substrate for hydrazine biosynthesis but also reveals a cryptic <i>N</i>-acylation step in the assembly of the pyrazole core. These results thus provide significant insights into the biosynthesis of pyrazole rings that are rarely seen in natural products.

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