Evaluationof Cereblon-Directing Warheads for theDevelopment of Orally Bioavailable PROTACs

PROTACs usually occupy physicochemical space outside the one defined by classical drug-like molecules, which often presents considerable challenges in their optimization and development for oral administration. We have previously reported phenyl glutarimide (PG)-based BET PROTAC SJ995973, with improved overall <i>in vitro</i> degradation and antiproliferative activities compared to its direct thalidomide-based analogue dBET1, but similarly poor <i>in vivo</i> pharmacokinetic profile. To further demonstrate the PG utility, we describe here optimization efforts that led to the discovery of an orally bioavailable BET-PROTAC SJ44236 (<b>8</b>), and results of a comprehensive <i>in vitro/vivo</i> comparative study with analogues containing alternative CRBN-directing warheads. Our study highlights the importance of considering warhead modifications when optimizing PROTACs for oral delivery.

Publication Details

Journal
Figshare
Published
2025-01-15
DOI
https://doi.org/10.1021/acs.jmedchem.4c02709.s001
Primary Topic
Protein Degradation and Inhibitors
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article
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article

Evaluationof Cereblon-Directing Warheads for theDevelopment of Orally Bioavailable PROTACs

Figshare
Protein Degradation and Inhibitors
article

Evaluationof Cereblon-Directing Warheads for theDevelopment of Orally Bioavailable PROTACs

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Abstract

PROTACs usually occupy physicochemical space outside the one defined by classical drug-like molecules, which often presents considerable challenges in their optimization and development for oral administration. We have previously reported phenyl glutarimide (PG)-based BET PROTAC SJ995973, with improved overall <i>in vitro</i> degradation and antiproliferative activities compared to its direct thalidomide-based analogue dBET1, but similarly poor <i>in vivo</i> pharmacokinetic profile. To further demonstrate the PG utility, we describe here optimization efforts that led to the discovery of an orally bioavailable BET-PROTAC SJ44236 (<b>8</b>), and results of a comprehensive <i>in vitro/vivo</i> comparative study with analogues containing alternative CRBN-directing warheads. Our study highlights the importance of considering warhead modifications when optimizing PROTACs for oral delivery.

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Protein Degradation and Inhibitors
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