OrganozincReagents in Solution: Insights from AbInitio Molecular Dynamics and X‑ray Absorption Spectroscopy

Organozinc reagents are widely used in synthesis; however, their solution-phase structures and the resulting effects on reactivity remain insufficiently understood. Here, we present a computational workflow, validated by X-ray absorption spectroscopy, to characterize the solvation dynamics of ZnCl<sub>2</sub>, ZnMeCl, and ZnMe<sub>2</sub> in tetrahydrofuran (THF) solution. Ab initio molecular dynamics (metadynamics and Blue Moon sampling) in explicit solvent cage reveal a distribution of solvation states at room temperature, resolving the long-standing ambiguity surrounding the solvation environment of ZnMe<sub>2</sub>. Spectral signatures derived from molecular dynamic trajectories and time-dependent DFT closely match the experimental XANES and IR data collected from the literature. We apply this framework to evaluate the effects of solvation on the transmetalation between ZnMe<sub>2</sub> and PdMeCl(PPh<sub>2</sub>Me)<sub>2</sub>. Although THF coordination to ZnMe<sub>2</sub> has a limited influence on activation barriers, changes in solvation state along the reaction coordinate emerge as key thermodynamic drivers. These findings underscore the need to account for solvation equilibria when modeling organozinc-mediated catalytic processes.

Publication Details

Journal
Figshare
Published
2025-07-23
DOI
https://doi.org/10.1021/acs.inorgchem.5c02580.s001
Primary Topic
Mycorrhizal Fungi and Plant Interactions
Type
article
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OrganozincReagents in Solution: Insights from AbInitio Molecular Dynamics and X‑ray Absorption Spectroscopy

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Mycorrhizal Fungi and Plant Interactions
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OrganozincReagents in Solution: Insights from AbInitio Molecular Dynamics and X‑ray Absorption Spectroscopy

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Abstract

Organozinc reagents are widely used in synthesis; however, their solution-phase structures and the resulting effects on reactivity remain insufficiently understood. Here, we present a computational workflow, validated by X-ray absorption spectroscopy, to characterize the solvation dynamics of ZnCl<sub>2</sub>, ZnMeCl, and ZnMe<sub>2</sub> in tetrahydrofuran (THF) solution. Ab initio molecular dynamics (metadynamics and Blue Moon sampling) in explicit solvent cage reveal a distribution of solvation states at room temperature, resolving the long-standing ambiguity surrounding the solvation environment of ZnMe<sub>2</sub>. Spectral signatures derived from molecular dynamic trajectories and time-dependent DFT closely match the experimental XANES and IR data collected from the literature. We apply this framework to evaluate the effects of solvation on the transmetalation between ZnMe<sub>2</sub> and PdMeCl(PPh<sub>2</sub>Me)<sub>2</sub>. Although THF coordination to ZnMe<sub>2</sub> has a limited influence on activation barriers, changes in solvation state along the reaction coordinate emerge as key thermodynamic drivers. These findings underscore the need to account for solvation equilibria when modeling organozinc-mediated catalytic processes.

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Mycorrhizal Fungi and Plant Interactions
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OrganozincReagents in Solution: Insights from AbInitio Molecular Dynamics and X‑ray Absorption Spectroscopy · Figshare (2025) | TGRS Research Map | TGRS