Whole Genome Assembly and Annotation of<i> Fusarium acuminatum</i> Isolate 1A

This dataset includes the high-quality whole genome assembly and annotation of <i>Fusarium acuminatum</i> isolate 1A, obtained using Oxford Nanopore Technologies (ONT) and Illumina sequencing. The data supports the study titled <i>"High quality whole genome assembly of Fusarium acuminatum and comparative genomics reveal co-evolution of CAZymes and diverse effectors."</i> The assembly and annotation data provide valuable insights into the genomic architecture, including genes related to pathogenicity, carbohydrate-active enzymes (CAZymes), and potential effector proteins. The dataset is crucial for understanding the co-evolution of virulence factors and host adaptation mechanisms in <i>Fusarium</i> species.<b>Fusarium_acuminatum_1A_genome.fa</b><br>The assembled genome sequence of <i>Fusarium acuminatum</i> isolate 1A in FASTA format.<b>Fusarium_acuminatum_1A_annotation.xls</b><br>A spreadsheet containing the annotated genes, including functional annotations of coding-genes.<b>Fusarium_acuminatum_gff/</b><b>Fusarium_acuminatum_1A_gene.gff</b>: Gene annotation file in GFF format, specifying the genomic locations of protein-coding genes.<b>Fusarium_acuminatum_1A_rRNA.gff</b>: GFF file indicating the locations of ribosomal RNA (rRNA) genes.<b>Fusarium_acuminatum_1A_snRNA.gff</b>: GFF file listing the locations of small nuclear RNA (snRNA) genes.<b>Fusarium_acuminatum_1A_tRNA.gff</b>: GFF file detailing the locations of transfer RNA (tRNA) genes.<b>1A_clean_R1.fq</b> and <b>1A_clean_R2.fq</b><br>Cleaned Illumina sequencing reads in FASTQ format, representing paired-end reads used for genome assembly and error correction.<br>

Publication Details

Journal
Figshare
Published
2024-11-26
DOI
https://doi.org/10.6084/m9.figshare.27203421
Primary Topic
Mycorrhizal Fungi and Plant Interactions
Type
article
Field-Weighted Citation Impact
0.00
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Whole Genome Assembly and Annotation of Fusarium acuminatum Isolate 1A

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Mycorrhizal Fungi and Plant Interactions
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Whole Genome Assembly and Annotation of Fusarium acuminatum Isolate 1A

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Abstract

This dataset includes the high-quality whole genome assembly and annotation of <i>Fusarium acuminatum</i> isolate 1A, obtained using Oxford Nanopore Technologies (ONT) and Illumina sequencing. The data supports the study titled <i>"High quality whole genome assembly of Fusarium acuminatum and comparative genomics reveal co-evolution of CAZymes and diverse effectors."</i> The assembly and annotation data provide valuable insights into the genomic architecture, including genes related to pathogenicity, carbohydrate-active enzymes (CAZymes), and potential effector proteins. The dataset is crucial for understanding the co-evolution of virulence factors and host adaptation mechanisms in <i>Fusarium</i> species.<b>Fusarium_acuminatum_1A_genome.fa</b><br>The assembled genome sequence of <i>Fusarium acuminatum</i> isolate 1A in FASTA format.<b>Fusarium_acuminatum_1A_annotation.xls</b><br>A spreadsheet containing the annotated genes, including functional annotations of coding-genes.<b>Fusarium_acuminatum_gff/</b><b>Fusarium_acuminatum_1A_gene.gff</b>: Gene annotation file in GFF format, specifying the genomic locations of protein-coding genes.<b>Fusarium_acuminatum_1A_rRNA.gff</b>: GFF file indicating the locations of ribosomal RNA (rRNA) genes.<b>Fusarium_acuminatum_1A_snRNA.gff</b>: GFF file listing the locations of small nuclear RNA (snRNA) genes.<b>Fusarium_acuminatum_1A_tRNA.gff</b>: GFF file detailing the locations of transfer RNA (tRNA) genes.<b>1A_clean_R1.fq</b> and <b>1A_clean_R2.fq</b><br>Cleaned Illumina sequencing reads in FASTQ format, representing paired-end reads used for genome assembly and error correction.<br>

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Mycorrhizal Fungi and Plant Interactions
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