Supplementary content to Denk et al.: A subgeneric classification of <i>Fagus</i> (Fagaceae) and revised taxonomy of western Eurasian beeches

This file collection includes supporting data and supplementary information. <b>Appendix_1.pdf</b> provides a protocol for assigning 5S rDNA intergenic spacer variants to systematic-taxonomically informative phylogenetic lineages and main sequence types in beeches and includes Figures S1­–S8 and Tables S1, S2.<b>EPA_annotation.xlsx </b>is a spread-sheet summarising and tabulating the results of the primary and secondary EPA (assignment of sequence variants to main types using the Evolutionary Placement Algorithm implemented in RAxML/EPA-ng) using a customized reference tree for Western Eurasian beeches: <b>EPARefTreeWEurasia.new</b> (NEWICK-formatted)<b>Genotypification.xlsx </b>tabulates genetic sequence characteristics of species of beech across several nuclear and plastid gene regions compiled from published data and including new data generated for J. R. P. Worth et al., work in progress.<b>Supporting Data Archive.zip</b> includes various supporting and analysis files required for genotaxonomic assessment of beech individuals. See _Content.txt for full content and file labelling conventions.

Publication Details

Journal
Figshare
Published
2024-09-09
DOI
https://doi.org/10.6084/m9.figshare.26968882
Primary Topic
Genetic diversity and population structure
Type
article
Field-Weighted Citation Impact
0.00
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Supplementary content to Denk et al.: A subgeneric classification of Fagus (Fagaceae) and revised taxonomy of western Eurasian beeches

Figshare
Genetic diversity and population structure
article

Supplementary content to Denk et al.: A subgeneric classification of Fagus (Fagaceae) and revised taxonomy of western Eurasian beeches

article en

Abstract

This file collection includes supporting data and supplementary information. <b>Appendix_1.pdf</b> provides a protocol for assigning 5S rDNA intergenic spacer variants to systematic-taxonomically informative phylogenetic lineages and main sequence types in beeches and includes Figures S1­–S8 and Tables S1, S2.<b>EPA_annotation.xlsx </b>is a spread-sheet summarising and tabulating the results of the primary and secondary EPA (assignment of sequence variants to main types using the Evolutionary Placement Algorithm implemented in RAxML/EPA-ng) using a customized reference tree for Western Eurasian beeches: <b>EPARefTreeWEurasia.new</b> (NEWICK-formatted)<b>Genotypification.xlsx </b>tabulates genetic sequence characteristics of species of beech across several nuclear and plastid gene regions compiled from published data and including new data generated for J. R. P. Worth et al., work in progress.<b>Supporting Data Archive.zip</b> includes various supporting and analysis files required for genotaxonomic assessment of beech individuals. See _Content.txt for full content and file labelling conventions.

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Openalex Percentile: Top 55%
Genetic diversity and population structure
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Supplementary content to Denk et al.: A subgeneric classification of <i>Fagus</i> (Fagaceae) and revised taxonomy of western Eurasian beeches · Figshare (2024) | TGRS Research Map | TGRS