VueGen: Automating the creation of scientific reports

Presentation of the VueGen project in the Bioinformatics Open Source Conference (BOSC) 2025 (as part of ISMB/ECCB 2025) on July 21, 2025. VueGen is a tool that automates the creation of reports from bioinformatics outputs, allowing researchers with minimal coding experience to communicate their results effectively. With VueGen, users can produce reports by simply specifying a directory containing output files, such as plots, tables, networks, Markdown text, HTML components, and API calls, along with the report format. Supported formats include documents (PDF, HTML, DOCX, ODT), presentations (PPTX, Reveal.js), Jupyter notebooks, and Streamlit web applications.