diffMONT: predicting methylation-specific PCR biomarkers based on nanopore sequencing data for clinical application

diffMONT is a python-based tool for predicting methylation-specific PCR (MSP) primers, based on Nanopore sequencing data. Given a merged bedmethyl file, diffMONT detects methylation-specific PCR primer regions, which can distinguish between two groups of samples (originally cancer patients vs. healthy controls). This repository contains both a copy of the github repository (https://github.com/rnajena/diffMONT) and the result files used for publication.

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-12-18
DOI
https://doi.org/10.5281/zenodo.14501611
Primary Topic
Sperm and Testicular Function
Type
article
Field-Weighted Citation Impact
0.00
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article

diffMONT: predicting methylation-specific PCR biomarkers based on nanopore sequencing data for clinical application

Zenodo (CERN European Organization for Nuclear Research)
Sperm and Testicular Function
article

diffMONT: predicting methylation-specific PCR biomarkers based on nanopore sequencing data for clinical application

article en

Abstract

diffMONT is a python-based tool for predicting methylation-specific PCR (MSP) primers, based on Nanopore sequencing data. Given a merged bedmethyl file, diffMONT detects methylation-specific PCR primer regions, which can distinguish between two groups of samples (originally cancer patients vs. healthy controls). This repository contains both a copy of the github repository (https://github.com/rnajena/diffMONT) and the result files used for publication.

Zenodo (CERN European Organization for Nuclear Research)
Openalex Percentile: Top 53%
Sperm and Testicular Function
DOIOpen Access PDFOpenAlex
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diffMONT: predicting methylation-specific PCR biomarkers based on nanopore sequencing data for clinical application · Zenodo (CERN European Organization for Nuclear Research) (2024) | TGRS Research Map | TGRS