The Impact of Research Data Infrastructures: The Case of the AlphaFold Database

While the scientific output of research infrastructures is well documented, the broader effects of their secondary outputs, such as computational resources and datasets, remain poorly understood. To better understand the benefits of these public resources, this study explores the AlphaFold (AFDB) database, a collaboration between DeepMind and the European Molecular Biology Laboratory (EMBL) that democratizes access to protein structure data. Employing a quantitative case study strategy using bibliometric analysis, this study compares publications indexed in the Web of Science Core Collection citing the original AF paper (Jumper et al., 2021) with those citing the AlphaFold database (Varadi et al., 2022), covering publications up to August 2024. We examine the impact of the EMBL AlphaFold database on research themes, collaboration patterns, and scientific impact. Our exploratory analysis identifies several impacts: studies leveraging the AF database investigate application-focused themes and require collaboration between fewer institutions. This research highlights the wide-ranging impacts of research infrastructures, emphasizing the need for comprehensive impact assessments to inform future research policy and funding decisions.

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Publication Details

Journal
DAU - Digital Archive of URL
Published
2024-09-26
DOI
https://doi.org/10.23726/cij.2025.1597
Primary Topic
Microbial Natural Products and Biosynthesis
Type
article
Field-Weighted Citation Impact
0.00

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article

The Impact of Research Data Infrastructures: The Case of the AlphaFold Database

DAU - Digital Archive of URL
Microbial Natural Products and Biosynthesis
article

The Impact of Research Data Infrastructures: The Case of the AlphaFold Database

article en

Abstract

While the scientific output of research infrastructures is well documented, the broader effects of their secondary outputs, such as computational resources and datasets, remain poorly understood. To better understand the benefits of these public resources, this study explores the AlphaFold (AFDB) database, a collaboration between DeepMind and the European Molecular Biology Laboratory (EMBL) that democratizes access to protein structure data. Employing a quantitative case study strategy using bibliometric analysis, this study compares publications indexed in the Web of Science Core Collection citing the original AF paper (Jumper et al., 2021) with those citing the AlphaFold database (Varadi et al., 2022), covering publications up to August 2024. We examine the impact of the EMBL AlphaFold database on research themes, collaboration patterns, and scientific impact. Our exploratory analysis identifies several impacts: studies leveraging the AF database investigate application-focused themes and require collaboration between fewer institutions. This research highlights the wide-ranging impacts of research infrastructures, emphasizing the need for comprehensive impact assessments to inform future research policy and funding decisions.

DAU - Digital Archive of URL
Universitat Ramon Llull (ES)
DeepMind, European Commission
Industry, innovation and infrastructure
Openalex Percentile: Top 65%
Microbial Natural Products and Biosynthesis
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