Probing London Dispersionin Proton-Bound Onium Ions:Are Alkyl–Alkyl Steric Interactions Reliably Modeled?

We report spectroscopic and spectrometric experiments that probe the London dispersion interaction between <i>tert</i>-butyl substituents in three series of covalently linked, protonated <i>bis</i>-pyridines in the gas phase. Molecular ions in the three test series, along with several reference molecules for control, were electrosprayed from solution into the gas phase and then probed by infrared multiphoton dissociation spectroscopy and trapped ion mobility spectrometry. The observed N–H stretching frequencies provided an experimental readout diagnostic of the ground-state geometry of each ion, which could be furthermore compared to a second, independent structural readout via the collision cross section. In each of the three series, the strength of a London dispersion interaction could be modulated systematically by a progressive increase in the size of substituents from H to Me to <i>tert</i>-Bu. Parallel to the experimental study, extensive dispersion-corrected density functional theory (DFT-D3BJ) calculations were performed with a range of exchange correlation functionals. A full analysis of the conformational space for the flexible members of the series, and an analysis of the vibrational spectra in the context of a general double-well potential, finds that DFT-D3BJ appears to significantly overbind alkyl–alkyl interactions, specifically interactions between <i>tert</i>-Bu groups, even failing to predict the minimum energy structures reliably in the case of molecules in which London dispersion competes with other noncovalent interactions such as hydrogen bonding.

Publication Details

Journal
Figshare
Published
2025-01-28
DOI
https://doi.org/10.1021/jacs.4c14525.s001
Primary Topic
Mass Spectrometry Techniques and Applications
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article
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Probing London Dispersionin Proton-Bound Onium Ions:Are Alkyl–Alkyl Steric Interactions Reliably Modeled?

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Mass Spectrometry Techniques and Applications
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Probing London Dispersionin Proton-Bound Onium Ions:Are Alkyl–Alkyl Steric Interactions Reliably Modeled?

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Abstract

We report spectroscopic and spectrometric experiments that probe the London dispersion interaction between <i>tert</i>-butyl substituents in three series of covalently linked, protonated <i>bis</i>-pyridines in the gas phase. Molecular ions in the three test series, along with several reference molecules for control, were electrosprayed from solution into the gas phase and then probed by infrared multiphoton dissociation spectroscopy and trapped ion mobility spectrometry. The observed N–H stretching frequencies provided an experimental readout diagnostic of the ground-state geometry of each ion, which could be furthermore compared to a second, independent structural readout via the collision cross section. In each of the three series, the strength of a London dispersion interaction could be modulated systematically by a progressive increase in the size of substituents from H to Me to <i>tert</i>-Bu. Parallel to the experimental study, extensive dispersion-corrected density functional theory (DFT-D3BJ) calculations were performed with a range of exchange correlation functionals. A full analysis of the conformational space for the flexible members of the series, and an analysis of the vibrational spectra in the context of a general double-well potential, finds that DFT-D3BJ appears to significantly overbind alkyl–alkyl interactions, specifically interactions between <i>tert</i>-Bu groups, even failing to predict the minimum energy structures reliably in the case of molecules in which London dispersion competes with other noncovalent interactions such as hydrogen bonding.

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Probing London Dispersionin Proton-Bound Onium Ions:Are Alkyl–Alkyl Steric Interactions Reliably Modeled? · Figshare (2025) | TGRS Research Map | TGRS