Crystalline Molecular\nCleft Clathrates

A rigid bis(urea) molecular cleft (<b>BU1</b>)\nbased on the <i>cis</i> diastereomer of a rigid isophorone-derived\nspacer forms\nsolid-state inclusion complexes with a range of small molecular guests.\nLarger guests can be accommodated by a shift in orientation to open\nup crystalline channels while retaining the same overall hydrogen-bonded\ntopology. The introduction of molecular flexibility to give <b>BU2</b>, which possesses a methylene spacer, destroys the host–guest\ncomplexation behavior and restores the more conventional urea α-tape\npacking, giving viscous solutions due to columnar aggregation. Crystallization\nof both <b>BU1</b> and <b>BU2</b> from a mixture of <i>cis</i> and <i>trans</i> diastereomeric forms is highly\ndiastereoselective with the <i>cis</i> isomers being significantly\nless soluble. Isolation of a <i>trans</i> isomer of <b>BU2</b> from crystallization of <i>cis</i>-depleted\nmother liquor reveals an unusual intramolecular hydrogen bond arrangement,\nexplaining its greater solubility.

Publication Details

Journal
Figshare
Published
2024-08-21
DOI
https://doi.org/10.1021/acs.cgd.4c00928.s001
Primary Topic
Organoboron and organosilicon chemistry
Type
article
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article

Crystalline Molecular\nCleft Clathrates

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Organoboron and organosilicon chemistry
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Crystalline Molecular\nCleft Clathrates

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Abstract

A rigid bis(urea) molecular cleft (<b>BU1</b>)\nbased on the <i>cis</i> diastereomer of a rigid isophorone-derived\nspacer forms\nsolid-state inclusion complexes with a range of small molecular guests.\nLarger guests can be accommodated by a shift in orientation to open\nup crystalline channels while retaining the same overall hydrogen-bonded\ntopology. The introduction of molecular flexibility to give <b>BU2</b>, which possesses a methylene spacer, destroys the host–guest\ncomplexation behavior and restores the more conventional urea α-tape\npacking, giving viscous solutions due to columnar aggregation. Crystallization\nof both <b>BU1</b> and <b>BU2</b> from a mixture of <i>cis</i> and <i>trans</i> diastereomeric forms is highly\ndiastereoselective with the <i>cis</i> isomers being significantly\nless soluble. Isolation of a <i>trans</i> isomer of <b>BU2</b> from crystallization of <i>cis</i>-depleted\nmother liquor reveals an unusual intramolecular hydrogen bond arrangement,\nexplaining its greater solubility.

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Organoboron and organosilicon chemistry
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