Additional file 6 of Analysis of early childhood intestinal microbial dynamics in a continuous-flow bioreactor

Supplementary Material 6: Figure 5. A library of isolated bacterial strains generates a reproducible bacterial community. (a, c, e) Alluvial plots show the relative abundance of ASVs from the 118 strains defined inoculum (day 0) and following inoculation of three replicate chemostat vessels, sampled over time (key upper right). (b,d,f) ASVs in the inoculum and triplicate cultures stratified by their identification in the culture over time, where colors represent the nine predominant phyla. ASVs are ordered by prevalence categories.