VirJenDB: the metadata-centric Virus database from FSU Jena

This poster was presented at the Fellowship of the Data — International RDM Community Meeting 2025 (Jena, 1-2 April 2025). Abstract Viral databases are vital for bioinformatics-driven virological research; however, research is hindered by errors in user-submitted sequences and metadata. Despite ongoing community efforts to curate virus metadata and establish standards, structured models for specific virus groups are needed to enhance FAIR data across disciplines like ecology, medicine, and agriculture. The VirJenDB virus sequence database presents a metadata-driven approach to support virus researchers at multiple steps of the research data lifecycle. An extensive metadata catalogue was harvested along with virus sequences from publicly available sources, including databases such as NCBI Virus, ENA and the BVBRC, and community-driven standards like the MIGS-VI and ENV-O. The VJDB team leverages this dataset in the development of web-accessible services, including customizable metadata templates which integrate with our pilot ENA submission wizard and can be populated using existing ontologies and database suggestions to guide researchers and encourage the deposition of metadata-rich virus sequences to the ENA. In summary, VJDB aims to empower researchers with a web portal to support virus research from the initial stages to publication and beyond. Thus, the VJDB will help develop extensive virus metadata standards from and for sharing with the research community. Website https://virjendb.org/

Institutions

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2025-04-01
DOI
https://doi.org/10.5281/zenodo.15296231
Primary Topic
Research Data Management Practices
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

VirJenDB: the metadata-centric Virus database from FSU Jena

Zenodo (CERN European Organization for Nuclear Research)
Research Data Management Practices
article

VirJenDB: the metadata-centric Virus database from FSU Jena

article en

Abstract

This poster was presented at the Fellowship of the Data — International RDM Community Meeting 2025 (Jena, 1-2 April 2025). Abstract Viral databases are vital for bioinformatics-driven virological research; however, research is hindered by errors in user-submitted sequences and metadata. Despite ongoing community efforts to curate virus metadata and establish standards, structured models for specific virus groups are needed to enhance FAIR data across disciplines like ecology, medicine, and agriculture. The VirJenDB virus sequence database presents a metadata-driven approach to support virus researchers at multiple steps of the research data lifecycle. An extensive metadata catalogue was harvested along with virus sequences from publicly available sources, including databases such as NCBI Virus, ENA and the BVBRC, and community-driven standards like the MIGS-VI and ENV-O. The VJDB team leverages this dataset in the development of web-accessible services, including customizable metadata templates which integrate with our pilot ENA submission wizard and can be populated using existing ontologies and database suggestions to guide researchers and encourage the deposition of metadata-rich virus sequences to the ENA. In summary, VJDB aims to empower researchers with a web portal to support virus research from the initial stages to publication and beyond. Thus, the VJDB will help develop extensive virus metadata standards from and for sharing with the research community. Website https://virjendb.org/

Zenodo (CERN European Organization for Nuclear Research)
German Centre for Integrative Biodiversity Research (DE), Leibniz Institute on Aging - Fritz Lipmann Institute (FLI) (DE), Bioinformatics Institute (RU), Friedrich Schiller University Jena (DE)
Zero hunger
Openalex Percentile: Top 42%
Research Data Management Practices
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

VirJenDB: the metadata-centric Virus database from FSU Jena · Zenodo (CERN European Organization for Nuclear Research) (2025) | TGRS Research Map | TGRS