Comparative gene annotation of 304 species of Drosophilidae

This dataset includes gene annotations, orthogroups (HOGs), and multiple sequence alignments & gene trees for 304 Drosophilidae species, generated using Comparative Annotation Toolkit (CAT) and BRAKER3. This dataset includes: Genome annotations in gff format (annotations.tar.gz) Genome assemblies in fasta format (genomes.tar.gz) Orthogroup assisgnments file (HOGs; HOG_filtered.tsv) HOG alignments using MACSE (HOG_alignments.tar.gz) Gene trees generated using iqtree (GeneTrees.tar.gz) Other files