Chrysalis: decoding tissue compartments in spatial transcriptomics with archetypal analysis

This repository contains data generated for the following study: Chrysalis: decoding tissue compartments in spatial transcriptomics with archetypal analysisDemeter Túrós, Jelica Vasiljevic, Kerstin Hahn, Sven Rottenberg and Alberto Valdeolivas The ZIP file includes all generated and analyzed datasets, intermediary files, results of cell type deconvolution, marker gene sets, single-cell labels, reference data, and expert annotations. Some of these files are necessary for running the scripts and notebooks available in the Chrysalis GitHub repository.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-08-29
DOI
https://doi.org/10.5281/zenodo.13624997
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
0.00
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article

Chrysalis: decoding tissue compartments in spatial transcriptomics with archetypal analysis

Zenodo (CERN European Organization for Nuclear Research)
Single-cell and spatial transcriptomics
article

Chrysalis: decoding tissue compartments in spatial transcriptomics with archetypal analysis

article en

Abstract

This repository contains data generated for the following study: Chrysalis: decoding tissue compartments in spatial transcriptomics with archetypal analysisDemeter Túrós, Jelica Vasiljevic, Kerstin Hahn, Sven Rottenberg and Alberto Valdeolivas The ZIP file includes all generated and analyzed datasets, intermediary files, results of cell type deconvolution, marker gene sets, single-cell labels, reference data, and expert annotations. Some of these files are necessary for running the scripts and notebooks available in the Chrysalis GitHub repository.

Zenodo (CERN European Organization for Nuclear Research)
University of Bern (CH)
Openalex Percentile: Top 71%
Single-cell and spatial transcriptomics
DOIOpen Access PDFOpenAlex
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Chrysalis: decoding tissue compartments in spatial transcriptomics with archetypal analysis · Zenodo (CERN European Organization for Nuclear Research) (2024) | TGRS Research Map | TGRS