Phenotypic heterogeneity defines B-cell responses to repeated SARS-CoV-2 exposures through vaccination and infection

R code and datasets to generate the figures 7 and S7, RBC-reactive clusters correlate with neutralizing antibody titers at concurrent and non-concurrent timepoints and strongest in the absence of prior infection. The code covers the dataset preprocessing and heatmap plottings showing correlation, p_value, and FDR values, as well as positive ID50 and/or ID80. Statistics by Spearman rank correlation and corrected for multiple testing. Please note that TI01 and TI02 in codes and data files refer to D14 and D28 post-infection respectively in the manuscript. Neutralization.zip: Figures 1C & S1C IgA.zip: Figure S1B IgG_IgM.zip: Figure 1B for IgG and unpublished for IgM Correlation_Neutralization_FlowCytometry.zip: Figures 7 and S7 FlowCytometry.zip: Figures 3, 4, 5A, 5B, S3, S4, S5A

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-08-20
DOI
https://doi.org/10.5281/zenodo.13350228
Primary Topic
SARS-CoV-2 and COVID-19 Research
Type
article
Field-Weighted Citation Impact
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article

Phenotypic heterogeneity defines B-cell responses to repeated SARS-CoV-2 exposures through vaccination and infection

Zenodo (CERN European Organization for Nuclear Research)
SARS-CoV-2 and COVID-19 Research
article

Phenotypic heterogeneity defines B-cell responses to repeated SARS-CoV-2 exposures through vaccination and infection

article en

Abstract

R code and datasets to generate the figures 7 and S7, RBC-reactive clusters correlate with neutralizing antibody titers at concurrent and non-concurrent timepoints and strongest in the absence of prior infection. The code covers the dataset preprocessing and heatmap plottings showing correlation, p_value, and FDR values, as well as positive ID50 and/or ID80. Statistics by Spearman rank correlation and corrected for multiple testing. Please note that TI01 and TI02 in codes and data files refer to D14 and D28 post-infection respectively in the manuscript. Neutralization.zip: Figures 1C & S1C IgA.zip: Figure S1B IgG_IgM.zip: Figure 1B for IgG and unpublished for IgM Correlation_Neutralization_FlowCytometry.zip: Figures 7 and S7 FlowCytometry.zip: Figures 3, 4, 5A, 5B, S3, S4, S5A

Zenodo (CERN European Organization for Nuclear Research)
National Institute of Allergy and Infectious Diseases (US)
Good health and well-being
Openalex Percentile: Top 61%
SARS-CoV-2 and COVID-19 Research
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