Miocene pulse of diversification of the Brazil nut family

This dataset include all the sample metadata associated with: Evidence for a Miocene pulse of diversification of the Brazil nut family (Lecythidaceae) in tropical America Jérôme Chave, Charles Pouchon, Uxue Suescun, Sébastien Lavergne, Christopher Dick, Oscar M. Vargas, Myriam Heuertz, Botany Letters. Files nuDNA.fa, mtDNA.fa, cpDNA.fa, and rDNA.fa are nuclear, mitochondrial, plastid, and ribosomal DNA alignments, respectively Files in '.partitions' represent the information on the DNA alignments Files in '.tre' are phylogenetic trees as output from the softwares IQtree, Astral, SDVquartet and SKmer. File nuDNA_dated1000_iqtree.tre is the main result of this analysis (dated phylogenetic tree)

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-08-14
DOI
https://doi.org/10.5281/zenodo.13323391
Primary Topic
Plant Diversity and Evolution
Type
article
Field-Weighted Citation Impact
0.00
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article

Miocene pulse of diversification of the Brazil nut family

Zenodo (CERN European Organization for Nuclear Research)
Plant Diversity and Evolution
article

Miocene pulse of diversification of the Brazil nut family

article en

Abstract

This dataset include all the sample metadata associated with: Evidence for a Miocene pulse of diversification of the Brazil nut family (Lecythidaceae) in tropical America Jérôme Chave, Charles Pouchon, Uxue Suescun, Sébastien Lavergne, Christopher Dick, Oscar M. Vargas, Myriam Heuertz, Botany Letters. Files nuDNA.fa, mtDNA.fa, cpDNA.fa, and rDNA.fa are nuclear, mitochondrial, plastid, and ribosomal DNA alignments, respectively Files in '.partitions' represent the information on the DNA alignments Files in '.tre' are phylogenetic trees as output from the softwares IQtree, Astral, SDVquartet and SKmer. File nuDNA_dated1000_iqtree.tre is the main result of this analysis (dated phylogenetic tree)

Zenodo (CERN European Organization for Nuclear Research)
Openalex Percentile: Top 67%
Plant Diversity and Evolution
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Miocene pulse of diversification of the Brazil nut family · Zenodo (CERN European Organization for Nuclear Research) (2024) | TGRS Research Map | TGRS