Relative log marginal likelihoods of simulations analysed under an exponential-growth coalescent tree prior.

<p>The top row is for heterochronous simulations, where temporal signal is present, and the bottom row is for isochronous simulations that do not have temporal signal. Within each panel the corners correspond to a combination of model and sampling times, either a strict (SC) or relaxed molecular clock with an underlying log-normal distribution (UCLD), and with (heterochronous) or without (isochronous) sampling times. The polygons represent the relative log marginal likelihood under three possible priors on the scaled population size (Φ) parameter of the exponential-growth coalescent tree prior. The correct model used to generate the data is the SC heterochronous (SC/het) for the top row and the SC isochronous (Iso/SC) for the bottom row. Each polygon is for one simulation replicate (a total of ten) and the colours denote whether we employed a hard bound on the root height of the form Uniform(0.0, 5.0), as shown in the legend.</p> <p>(PDF)</p>

Publication Details

Journal
Figshare
Published
2024-11-06
DOI
https://doi.org/10.1371/journal.pcbi.1012371.s005
Primary Topic
Markov Chains and Monte Carlo Methods
Type
article
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article

Relative log marginal likelihoods of simulations analysed under an exponential-growth coalescent tree prior.

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Markov Chains and Monte Carlo Methods
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Relative log marginal likelihoods of simulations analysed under an exponential-growth coalescent tree prior.

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Abstract

<p>The top row is for heterochronous simulations, where temporal signal is present, and the bottom row is for isochronous simulations that do not have temporal signal. Within each panel the corners correspond to a combination of model and sampling times, either a strict (SC) or relaxed molecular clock with an underlying log-normal distribution (UCLD), and with (heterochronous) or without (isochronous) sampling times. The polygons represent the relative log marginal likelihood under three possible priors on the scaled population size (Φ) parameter of the exponential-growth coalescent tree prior. The correct model used to generate the data is the SC heterochronous (SC/het) for the top row and the SC isochronous (Iso/SC) for the bottom row. Each polygon is for one simulation replicate (a total of ten) and the colours denote whether we employed a hard bound on the root height of the form Uniform(0.0, 5.0), as shown in the legend.</p> <p>(PDF)</p>

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Markov Chains and Monte Carlo Methods
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