Comparison of divergence patterns for HTR regions to those of background genome regions.

<p>Mean bedtools coverage in 10 kb regions relative to the whole genome. <i>I_Fx</i> = mean similarity with other <i>F</i>. <i>xylarioides</i> populations across 10 kb windows within HTR. <i>I_Fo</i> = mean similarity with closest <i>F</i>. <i>oxysporum</i> match across 10 kb windows within HTR. <i>I_Diff</i> is <i>I_Fx - I_Fo</i>, a metric of how similar is <i>F</i>. <i>xylarioides</i> versus <i>F</i>. <i>oxysporum</i>: positive value = more similar to <i>F</i>. <i>xylarioides</i>; negative = more similar to <i>F</i>. <i>oxysporum</i>. <i>p</i> = proportion of values of <i>I_Diff</i> from all contiguous regions of genome the same size as HTR that are ≤ the observed value of <i>I_Diff</i> for the HTR.</p> <p>(PDF)</p>