Trivalent siRNA-Conjugateswith Guanosine as ASGPR-BinderShow Potent Knock-Down In Vivo

To increase the chemical space around the well-known GalNAc-ligand as ASGPR-binder, a high-throughput screening campaign was performed, testing approximately 550,000 compounds. After evaluation of the potential screening hits, only one compound, which showed high similarity with guanosine nucleosides, was chosen for further profiling. Crystal structure analysis revealed the coordination of the Ca<sup>2+</sup>-ion within the ASGPR-binding site by the <i>cis</i>-diol motif of the ribose unit as well as an additional π–π-interaction of the purine heterocycle to tryptophan-243. Based on these findings, guanosine was attached via the 5′-OH group to a recently described morpholino-based nucleotide using two different linker units. The resulting morpholino-guanosine building blocks were conjugated to the 5′-end of a literature-known transthyretin targeting small interfering RNA (siRNA), leading to trivalent siRNA-guanosine conjugates, which were tested for their TTR knockdown and exhibited similar potencies as the analogous GalNAc-conjugates in vitro and in vivo.

Publication Details

Journal
Figshare
Published
2025-03-07
DOI
https://doi.org/10.1021/acs.jmedchem.4c02275.s001
Primary Topic
RNA Interference and Gene Delivery
Type
article
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article

Trivalent siRNA-Conjugateswith Guanosine as ASGPR-BinderShow Potent Knock-Down In Vivo

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RNA Interference and Gene Delivery
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Trivalent siRNA-Conjugateswith Guanosine as ASGPR-BinderShow Potent Knock-Down In Vivo

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Abstract

To increase the chemical space around the well-known GalNAc-ligand as ASGPR-binder, a high-throughput screening campaign was performed, testing approximately 550,000 compounds. After evaluation of the potential screening hits, only one compound, which showed high similarity with guanosine nucleosides, was chosen for further profiling. Crystal structure analysis revealed the coordination of the Ca<sup>2+</sup>-ion within the ASGPR-binding site by the <i>cis</i>-diol motif of the ribose unit as well as an additional π–π-interaction of the purine heterocycle to tryptophan-243. Based on these findings, guanosine was attached via the 5′-OH group to a recently described morpholino-based nucleotide using two different linker units. The resulting morpholino-guanosine building blocks were conjugated to the 5′-end of a literature-known transthyretin targeting small interfering RNA (siRNA), leading to trivalent siRNA-guanosine conjugates, which were tested for their TTR knockdown and exhibited similar potencies as the analogous GalNAc-conjugates in vitro and in vivo.

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