How Temperature ChangeAffects the Lattice Parameters,Molecular Conformation, and Reaction Cavity in Enantiomeric and RacemicCrystals of Thalidomide

For the single crystals of thalidomide (C<sub>13</sub>H<sub>10</sub>N<sub>2</sub>O<sub>4</sub>, TD) grown by the solvent evaporation method, the temperature dependences of the crystal structures have been investigated over a wide temperature range between 100 and 423.15 K. Comparing the α-form of a racemic TD crystal, which consists of symmetric heterochiral dimers and belongs to <i>P</i>2<sub>1</sub>/<i>n</i> space group, with the enantiomeric TD crystal, which belongs to <i>P</i>2<sub>1</sub> and consists of asymmetric (pseudosymmetric) homochiral dimers, there have been clear differences in the temperature-dependent changes of the lattice parameters, the isobaric linear thermal expansion coefficients (along the crystallographic and the principal Cartesian axes), the volumetric expansion coefficients of the unit cell, and the structures of hydrogen-bonded dimer in the crystal such as intra- and intermolecular dihedral angles, cavities (reaction cavities), and the hydrogen-bond length. In the asymmetric homochiral dimers, one monomer with a larger reaction cavity changes its intramolecular dihedral angle with temperature, while the other monomer with a smaller cavity does not. In contrast, in the symmetric heterochiral dimers, two monomers with the same cavity volume similarly change their intramolecular dihedral angles with the temperature. Such differences in the temperature-dependent conformational changes between asymmetric and symmetric dimers cause differences between enantiomeric and racemic crystals.

Publication Details

Journal
Figshare
Published
2025-03-27
DOI
https://doi.org/10.1021/jacs.4c18394.s001
Primary Topic
Crystallography and molecular interactions
Type
article
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article

How Temperature ChangeAffects the Lattice Parameters,Molecular Conformation, and Reaction Cavity in Enantiomeric and RacemicCrystals of Thalidomide

Figshare
Crystallography and molecular interactions
article

How Temperature ChangeAffects the Lattice Parameters,Molecular Conformation, and Reaction Cavity in Enantiomeric and RacemicCrystals of Thalidomide

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Abstract

For the single crystals of thalidomide (C<sub>13</sub>H<sub>10</sub>N<sub>2</sub>O<sub>4</sub>, TD) grown by the solvent evaporation method, the temperature dependences of the crystal structures have been investigated over a wide temperature range between 100 and 423.15 K. Comparing the α-form of a racemic TD crystal, which consists of symmetric heterochiral dimers and belongs to <i>P</i>2<sub>1</sub>/<i>n</i> space group, with the enantiomeric TD crystal, which belongs to <i>P</i>2<sub>1</sub> and consists of asymmetric (pseudosymmetric) homochiral dimers, there have been clear differences in the temperature-dependent changes of the lattice parameters, the isobaric linear thermal expansion coefficients (along the crystallographic and the principal Cartesian axes), the volumetric expansion coefficients of the unit cell, and the structures of hydrogen-bonded dimer in the crystal such as intra- and intermolecular dihedral angles, cavities (reaction cavities), and the hydrogen-bond length. In the asymmetric homochiral dimers, one monomer with a larger reaction cavity changes its intramolecular dihedral angle with temperature, while the other monomer with a smaller cavity does not. In contrast, in the symmetric heterochiral dimers, two monomers with the same cavity volume similarly change their intramolecular dihedral angles with the temperature. Such differences in the temperature-dependent conformational changes between asymmetric and symmetric dimers cause differences between enantiomeric and racemic crystals.

Figshare
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Crystallography and molecular interactions
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