Observationof a Crossed Double β‑Turnin a Capped <sup>D</sup>Pro-Gly-Ala Tripeptide: One-to-One Correspondencebetween X‑ray Crystallography, 2D-NMR, and Gas-Phase LaserSpectroscopy

Herein, we report for the first time a direct correspondence between the observation of a β-turn or a crossed double β-turn in the Boc-<sup>D</sup>Pro-Gly-Ala-NHBn-OMe (<sup>D</sup>PGA) tripeptide by using a combination of X-ray crystallography, 2D-NMR spectroscopy, and gas-phase laser spectroscopy supported by quantum chemistry calculations. Type-II′ and type-I double β-turns, involving the <sup>D</sup>PG and GA moieties of <sup>D</sup>PGA, respectively, are observed in both condensed-phase and gas-phase experiments. Additionally, a low-energy conformer of <sup>D</sup>PGA featuring a triple γ-turn backbone is detected in the gas-phase. This work also marks the first-ever observation of a type II′ β-turn involving <sup>D</sup>PG in a polypeptide within the gas-phase. The type II′ β-turn plays a crucial role in β-hairpin formation in polypeptides and proteins, whereas the type I β-turn is the most common structural feature, enabling a 180° reversal of polypeptide chains in proteins. Furthermore, our analyses of the Cambridge Structural Database (CSD) and Protein Data Bank (PDB) reveal that the crossed double β-turn structural motif is widely present in both peptides and proteins. A comprehensive investigation of this tripeptide’s secondary structural motif, derived from both condensed-phase and gas-phase studies, highlights the localized nature of secondary structures. This reinforces the significance of the intrinsic folding tendencies of amino acid residues in determining the peptide conformation.

Publication Details

Journal
Figshare
Published
2025-02-10
DOI
https://doi.org/10.1021/acs.jpclett.5c00003.s002
Primary Topic
Chemical Synthesis and Analysis
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article
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article

Observationof a Crossed Double β‑Turnin a Capped DPro-Gly-Ala Tripeptide: One-to-One Correspondencebetween X‑ray Crystallography, 2D-NMR, and Gas-Phase LaserSpectroscopy

Figshare
Chemical Synthesis and Analysis
article

Observationof a Crossed Double β‑Turnin a Capped DPro-Gly-Ala Tripeptide: One-to-One Correspondencebetween X‑ray Crystallography, 2D-NMR, and Gas-Phase LaserSpectroscopy

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Abstract

Herein, we report for the first time a direct correspondence between the observation of a β-turn or a crossed double β-turn in the Boc-<sup>D</sup>Pro-Gly-Ala-NHBn-OMe (<sup>D</sup>PGA) tripeptide by using a combination of X-ray crystallography, 2D-NMR spectroscopy, and gas-phase laser spectroscopy supported by quantum chemistry calculations. Type-II′ and type-I double β-turns, involving the <sup>D</sup>PG and GA moieties of <sup>D</sup>PGA, respectively, are observed in both condensed-phase and gas-phase experiments. Additionally, a low-energy conformer of <sup>D</sup>PGA featuring a triple γ-turn backbone is detected in the gas-phase. This work also marks the first-ever observation of a type II′ β-turn involving <sup>D</sup>PG in a polypeptide within the gas-phase. The type II′ β-turn plays a crucial role in β-hairpin formation in polypeptides and proteins, whereas the type I β-turn is the most common structural feature, enabling a 180° reversal of polypeptide chains in proteins. Furthermore, our analyses of the Cambridge Structural Database (CSD) and Protein Data Bank (PDB) reveal that the crossed double β-turn structural motif is widely present in both peptides and proteins. A comprehensive investigation of this tripeptide’s secondary structural motif, derived from both condensed-phase and gas-phase studies, highlights the localized nature of secondary structures. This reinforces the significance of the intrinsic folding tendencies of amino acid residues in determining the peptide conformation.

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Chemical Synthesis and Analysis
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Observationof a Crossed Double β‑Turnin a Capped <sup>D</sup>Pro-Gly-Ala Tripeptide: One-to-One Correspondencebetween X‑ray Crystallography, 2D-NMR, and Gas-Phase LaserSpectroscopy · Figshare (2025) | TGRS Research Map | TGRS