Observationof a Crossed Double β‑Turnin a Capped <sup>D</sup>Pro-Gly-Ala Tripeptide: One-to-One Correspondencebetween X‑ray Crystallography, 2D-NMR, and Gas-Phase LaserSpectroscopy
Herein, we report for the first time a direct correspondence between the observation of a β-turn or a crossed double β-turn in the Boc-<sup>D</sup>Pro-Gly-Ala-NHBn-OMe (<sup>D</sup>PGA) tripeptide by using a combination of X-ray crystallography, 2D-NMR spectroscopy, and gas-phase laser spectroscopy supported by quantum chemistry calculations. Type-II′ and type-I double β-turns, involving the <sup>D</sup>PG and GA moieties of <sup>D</sup>PGA, respectively, are observed in both condensed-phase and gas-phase experiments. Additionally, a low-energy conformer of <sup>D</sup>PGA featuring a triple γ-turn backbone is detected in the gas-phase. This work also marks the first-ever observation of a type II′ β-turn involving <sup>D</sup>PG in a polypeptide within the gas-phase. The type II′ β-turn plays a crucial role in β-hairpin formation in polypeptides and proteins, whereas the type I β-turn is the most common structural feature, enabling a 180° reversal of polypeptide chains in proteins. Furthermore, our analyses of the Cambridge Structural Database (CSD) and Protein Data Bank (PDB) reveal that the crossed double β-turn structural motif is widely present in both peptides and proteins. A comprehensive investigation of this tripeptide’s secondary structural motif, derived from both condensed-phase and gas-phase studies, highlights the localized nature of secondary structures. This reinforces the significance of the intrinsic folding tendencies of amino acid residues in determining the peptide conformation.
Publication Details
- Journal
- Figshare
- Published
- 2025-02-10
- DOI
- https://doi.org/10.1021/acs.jpclett.5c00003.s002
- Primary Topic
- Chemical Synthesis and Analysis
- Type
- article
- Field-Weighted Citation Impact
- 0.00