Additional file 2 of Benchmarking foundation cell models for post-perturbation RNA-seq prediction

Supplementary Material 2: Supplementary Figure 2 – Gene embedding analysis Correlation between gene embeddings was calculated between genes corresponding to the same REACTOME (top left), KEGG (top right) pathways or CollecTRI (bottom) gene regulatory networks. The difference between gene embedding similarities and random gene pairs is shown (y, axis, pearson_delta, mean +/- 95% CI).