Additional file 2 of Advancing the Indian cattle pangenome: characterizing non-reference sequences in Bos indicus
Additional file 2: Fig S1. Upset plot for the shared NUIs among five Bos indicus breeds from NUI discovery pipeline. Fig S2. Upset plot for the shared NUIs among five Bos indicus breeds from minigraph pipeline. Fig S3. Mapping rate of transcriptome sequencing reads to Brahman reference and pangenome. Fig S4. Volcano plot of differentially expressed NUI genes. Fig S5. Cladogram of 98 samples using presence and absence of NUIs. Fig S6. GO annotation of BICIs.
Institutions
- National Institute of Animal Biotechnology (IN)
- Agricultural Research Service - Northeast Area (US)
- Indian Institute of Technology Hyderabad (IN)
Publication Details
- Journal
- Figshare
- Published
- 2025-01-01
- DOI
- https://doi.org/10.6084/m9.figshare.28366483.v1
- Primary Topic
- Genetic and phenotypic traits in livestock
- Type
- article
- Field-Weighted Citation Impact
- 0.00