COI metabarcoding with a curated reference database and optimized protocol provides a reliable species-level diversity assessment of tardigrades - database ver.03

<b>COI reference database for tardigrades ver.03</b>The repository contains a reference database of curated COI sequences of tardigrades. The curated database is a ready-to-use tool allowing to investigate the diversity of the phylum Tardigrada in metabarcoding studies.Version 01 is the supplementary data for the publication Surmacz et al. 2025, Integrative Zoology and is subsequently updated to include new barcodes and taxonomic changes.The database includes the two files:<i>.XLSX</i> file with taxonomy annotation, sequences, and additional information, which can be easily converted to any format commonly used in metabarcoding pipelines;<i>.FASTA</i> file with the sequences and taxonomic classification in sequence headers.<br><b>Paper describing the database (and tardigrade COI metabarcoding protocol):</b><br>Surmacz B., Vecchi M., Fontaneto D., Budzik K., Godziek J., Matsko Y., Stec D. 2025. COI metabarcoding with a curated reference database and optimized protocol provides a reliable species-level diversity assessment of tardigrades. Integrative Zoology https://doi.org/10.1111/1749-4877.12972

Publication Details

Journal
Figshare
Published
2025-03-14
DOI
https://doi.org/10.6084/m9.figshare.27048157
Primary Topic
Tardigrade Biology and Ecology
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

COI metabarcoding with a curated reference database and optimized protocol provides a reliable species-level diversity assessment of tardigrades - database ver.03

Figshare
Tardigrade Biology and Ecology
article

COI metabarcoding with a curated reference database and optimized protocol provides a reliable species-level diversity assessment of tardigrades - database ver.03

article en

Abstract

<b>COI reference database for tardigrades ver.03</b>The repository contains a reference database of curated COI sequences of tardigrades. The curated database is a ready-to-use tool allowing to investigate the diversity of the phylum Tardigrada in metabarcoding studies.Version 01 is the supplementary data for the publication Surmacz et al. 2025, Integrative Zoology and is subsequently updated to include new barcodes and taxonomic changes.The database includes the two files:<i>.XLSX</i> file with taxonomy annotation, sequences, and additional information, which can be easily converted to any format commonly used in metabarcoding pipelines;<i>.FASTA</i> file with the sequences and taxonomic classification in sequence headers.<br><b>Paper describing the database (and tardigrade COI metabarcoding protocol):</b><br>Surmacz B., Vecchi M., Fontaneto D., Budzik K., Godziek J., Matsko Y., Stec D. 2025. COI metabarcoding with a curated reference database and optimized protocol provides a reliable species-level diversity assessment of tardigrades. Integrative Zoology https://doi.org/10.1111/1749-4877.12972

Figshare
Life in Land
Openalex Percentile: Top 65%
Tardigrade Biology and Ecology
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.