AA manuscript
Data related to AA manuscript Data to reproduce findings in the manuscript "Single-cell characterization of immune aplastic anemia reveals convergence of adaptive and innate immunity". The folder contains: 1) Processed scRNA+TCRαβ-seq data as Seurat-objects, including * "discovery" object with AA and healthy samples (Fig. 1) * "pan-heme" NK cell object with AA, healthy, and other hematological disorder samples (Fig. 2) * "pan-heme" CD8+ cell object with AA, healthy, and other hematological disorder samples (Fig. 2) * "pan-heme" CD4+ cell object with AA, healthy, and other hematological disorder samples (Fig. 2) * "co-culture" demultiplexed CD45+ object from all different co-culture conditions (Fig. 5&6) * "co-culture" HSPC object from all different co-culture conditions (Fig. 5) * "co-culture" NK cell object from all different co-culture conditions (Fig. 5) * "co-culture" CD8+ cell object from all different co-culture conditions (Fig. 6) 2) TCRβ-seq samples profiled in this study, including * AA * PNH * MDS * T-LGLL * IBMFS * ICUS/CHIP 3) scTCRαβ-seq data from AA BM samples 4) Olink cytokine data from AA and healthy samples Please see manuscript and Github for further details. Other accession codes are in the manuscript.
Institutions
- University of Helsinki (FI)
Publication Details
- Journal
- Zenodo (CERN European Organization for Nuclear Research)
- Published
- 2024-12-31
- DOI
- https://doi.org/10.5281/zenodo.8170957
- Primary Topic
- Hematopoietic Stem Cell Transplantation
- Type
- article
- Field-Weighted Citation Impact
- 0.00