Advances in Bacterial Classification: From Phenotypic Traits to Genomic Signatures

Our knowledge of the biology of bacterial systems and classification methods has greatly increased as a result of recent developments in bacterial classification using cell imaging. In other instances, imaging has fueled fascinating developments in bacterial cell biology that have resulted in a finer knowledge of the mechanisms behind protein localization and cell growth. Geometric elements taken from digital microscopic pictures have been used to create automated systems for the identification and classification of bacterial cells. The current study's goal is to create an automated system for recognizing and categorizing bacterial cells in digital microscopic cell photographs. Bacilli, cocci, and spirilla are the three forms of bacterial cells that are distinguished by their geometric properties. The existing techniques depend on a human expert's subjective interpretation of profiles using a variety of hand-staining techniques. These techniques have demonstrated potential in the classification of spiral bacteria, including Vibrio, Spirillum, and spirochete, as well as bacilli and cocci. More recently, the classification of bacterial images has shown remarkable accuracy because of deep learning techniques, especially Convolutional Neural Networks (CNNs). Bacterial pictures were classified into 20 medically important groups with 99.9% accuracy using a ResNet-50 CNN model. Clinical experts have traditionally classified using traditional methods that do not rely on prediction tools. Manually classifying germs is a difficult and time-consuming process that takes a lot of human labor.The study employs Convolutional Neural Network (CNN) and Deep Neural Network (DNN) for image classification, a promising machine-learning technique.

Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2025-05-08
DOI
https://doi.org/10.5281/zenodo.15367324
Primary Topic
Cell Image Analysis Techniques
Type
article
Field-Weighted Citation Impact
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article

Advances in Bacterial Classification: From Phenotypic Traits to Genomic Signatures

Zenodo (CERN European Organization for Nuclear Research)
Cell Image Analysis Techniques
article

Advances in Bacterial Classification: From Phenotypic Traits to Genomic Signatures

article en

Abstract

Our knowledge of the biology of bacterial systems and classification methods has greatly increased as a result of recent developments in bacterial classification using cell imaging. In other instances, imaging has fueled fascinating developments in bacterial cell biology that have resulted in a finer knowledge of the mechanisms behind protein localization and cell growth. Geometric elements taken from digital microscopic pictures have been used to create automated systems for the identification and classification of bacterial cells. The current study's goal is to create an automated system for recognizing and categorizing bacterial cells in digital microscopic cell photographs. Bacilli, cocci, and spirilla are the three forms of bacterial cells that are distinguished by their geometric properties. The existing techniques depend on a human expert's subjective interpretation of profiles using a variety of hand-staining techniques. These techniques have demonstrated potential in the classification of spiral bacteria, including Vibrio, Spirillum, and spirochete, as well as bacilli and cocci. More recently, the classification of bacterial images has shown remarkable accuracy because of deep learning techniques, especially Convolutional Neural Networks (CNNs). Bacterial pictures were classified into 20 medically important groups with 99.9% accuracy using a ResNet-50 CNN model. Clinical experts have traditionally classified using traditional methods that do not rely on prediction tools. Manually classifying germs is a difficult and time-consuming process that takes a lot of human labor.The study employs Convolutional Neural Network (CNN) and Deep Neural Network (DNN) for image classification, a promising machine-learning technique.

Zenodo (CERN European Organization for Nuclear Research)
Decent work and economic growth
Openalex Percentile: Top 70%
Cell Image Analysis Techniques
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