Enhancing GigaDB: Leveraging Modern Software Technologies for Large-Scale Biological Data Management

GigaDB, a pivotal resource for large-scale biological datasets, has undergone significant advancements through the integration of contemporary software technologies. This presentation will elucidate the methodologies and tools employed to upgrade the GigaDB platform, emphasising improvements in data accessibility, security and performance.By adopting advanced containerization solutions like Docker, leveraging modern software approaches like CI/CD and IaC, GigaDB ensures a robust and scalable infrastructure. These technologies streamline the development process, enabling seamless updates and efficient management of extensive datasets. Furthermore, the implementation of automated testing frameworks guarantees data integrity and system reliability, crucial for maintaining the high standards expected by the scientific community.This poster/talk will provide an in-depth overview of the architectural enhancements, including the migration to a microservices-based design and the utilisation of state-of-the-art database management systems.Our objective is to demonstrate how these technological advancements facilitate more efficient data handling and foster greater collaboration within the scientific community. Ultimately, the upgraded GigaDB serves as a model for other large-scale biological databases, showcasing the benefits of integrating modern software technologies to enhance data management and accessibility, and more importantly to make a bioinformatics application more resilient.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-10-04
DOI
https://doi.org/10.5281/zenodo.13888457
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
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article

Enhancing GigaDB: Leveraging Modern Software Technologies for Large-Scale Biological Data Management

Zenodo (CERN European Organization for Nuclear Research)
Scientific Computing and Data Management
article

Enhancing GigaDB: Leveraging Modern Software Technologies for Large-Scale Biological Data Management

article en

Abstract

GigaDB, a pivotal resource for large-scale biological datasets, has undergone significant advancements through the integration of contemporary software technologies. This presentation will elucidate the methodologies and tools employed to upgrade the GigaDB platform, emphasising improvements in data accessibility, security and performance.By adopting advanced containerization solutions like Docker, leveraging modern software approaches like CI/CD and IaC, GigaDB ensures a robust and scalable infrastructure. These technologies streamline the development process, enabling seamless updates and efficient management of extensive datasets. Furthermore, the implementation of automated testing frameworks guarantees data integrity and system reliability, crucial for maintaining the high standards expected by the scientific community.This poster/talk will provide an in-depth overview of the architectural enhancements, including the migration to a microservices-based design and the utilisation of state-of-the-art database management systems.Our objective is to demonstrate how these technological advancements facilitate more efficient data handling and foster greater collaboration within the scientific community. Ultimately, the upgraded GigaDB serves as a model for other large-scale biological databases, showcasing the benefits of integrating modern software technologies to enhance data management and accessibility, and more importantly to make a bioinformatics application more resilient.

Zenodo (CERN European Organization for Nuclear Research)
China Science and Technology Publishing & Media (CN)
Industry, innovation and infrastructure
Openalex Percentile: Top 55%
Scientific Computing and Data Management
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Enhancing GigaDB: Leveraging Modern Software Technologies for Large-Scale Biological Data Management · Zenodo (CERN European Organization for Nuclear Research) (2024) | TGRS Research Map | TGRS