SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data

Dataset for the publication "SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data". The preprocessed Scanpy object of the melanoma data is provided as "Melanoma_5612.h5ad". The SIMVI package is available at https://github.com/KlugerLab/SIMVI and can be installed using PyPI. Scripts used to generate results in the manuscript are also provided in this repository.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-10-11
DOI
https://doi.org/10.5281/zenodo.14707999
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
0.00
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article

SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data

Zenodo (CERN European Organization for Nuclear Research)
Single-cell and spatial transcriptomics
article

SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data

article en

Abstract

Dataset for the publication "SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data". The preprocessed Scanpy object of the melanoma data is provided as "Melanoma_5612.h5ad". The SIMVI package is available at https://github.com/KlugerLab/SIMVI and can be installed using PyPI. Scripts used to generate results in the manuscript are also provided in this repository.

Zenodo (CERN European Organization for Nuclear Research)
Yale University (US)
Openalex Percentile: Top 75%
Single-cell and spatial transcriptomics
DOIOpen Access PDFOpenAlex
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SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data · Zenodo (CERN European Organization for Nuclear Research) (2024) | TGRS Research Map | TGRS