PyDAP Revisited: Exploiting OPeNDAP's Data-Proximate Transformation Tools to Accelerate Scientific Workflows

OPeNDAP’s Hyrax Server enables researchers to access and share scientific datasets over the web efficiently, especially for NetCDF and HDF formats. Despite its widespread adoption and advancements like DAP4 and DMR++, the lack of modern client API tools hampers its usability in contemporary scientific workflows. PyDAP, a Python-based implementation of the DAP protocol, addresses this gap by integrating seamlessly with Xarray, allowing Python-native access to OPeNDAP data. This presentation revisits PyDAP’s modernization, highlighting the challenges and solutions in leveraging DAP4’s capabilities. Recent and ongoing developments include improved hierarchical data handling, enhanced DMR++ parsing for serverless S3 access, and the adoption of FastAPI to boost PyDAP’s performance. Benchmarks demonstrate significant performance gains using constrained requests, achieving up to 10-100x speedup in remote dataset access. These advancements position PyDAP as a critical tool for enabling efficient, scalable, and cost-effective open science workflows.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-12-04
DOI
https://doi.org/10.5281/zenodo.14278434
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
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article

PyDAP Revisited: Exploiting OPeNDAP's Data-Proximate Transformation Tools to Accelerate Scientific Workflows

Zenodo (CERN European Organization for Nuclear Research)
Scientific Computing and Data Management
article

PyDAP Revisited: Exploiting OPeNDAP's Data-Proximate Transformation Tools to Accelerate Scientific Workflows

article en

Abstract

OPeNDAP’s Hyrax Server enables researchers to access and share scientific datasets over the web efficiently, especially for NetCDF and HDF formats. Despite its widespread adoption and advancements like DAP4 and DMR++, the lack of modern client API tools hampers its usability in contemporary scientific workflows. PyDAP, a Python-based implementation of the DAP protocol, addresses this gap by integrating seamlessly with Xarray, allowing Python-native access to OPeNDAP data. This presentation revisits PyDAP’s modernization, highlighting the challenges and solutions in leveraging DAP4’s capabilities. Recent and ongoing developments include improved hierarchical data handling, enhanced DMR++ parsing for serverless S3 access, and the adoption of FastAPI to boost PyDAP’s performance. Benchmarks demonstrate significant performance gains using constrained requests, achieving up to 10-100x speedup in remote dataset access. These advancements position PyDAP as a critical tool for enabling efficient, scalable, and cost-effective open science workflows.

Zenodo (CERN European Organization for Nuclear Research)
Open Society (CZ)
Industry, innovation and infrastructure
Openalex Percentile: Top 55%
Scientific Computing and Data Management
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PyDAP Revisited: Exploiting OPeNDAP's Data-Proximate Transformation Tools to Accelerate Scientific Workflows · Zenodo (CERN European Organization for Nuclear Research) (2024) | TGRS Research Map | TGRS