Automated trait extraction from unstructured species descriptions for species ID: a pilot study using a large language model

Digitised collections of floral descriptions are a major source of trait information for digital identification systems. Mobilising species descriptions requires manual trait extraction and conversion to a structured format, which can significantly increase time and resource demands. We explored if a large language model (LLM) trained to process unstructured textual data could be used to automate and therefore accelerate the trait extraction pipeline for species identification.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-08-29
DOI
https://doi.org/10.5281/zenodo.13385757
Primary Topic
Species Distribution and Climate Change
Type
article
Field-Weighted Citation Impact
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article

Automated trait extraction from unstructured species descriptions for species ID: a pilot study using a large language model

Zenodo (CERN European Organization for Nuclear Research)
Species Distribution and Climate Change
article

Automated trait extraction from unstructured species descriptions for species ID: a pilot study using a large language model

article en

Abstract

Digitised collections of floral descriptions are a major source of trait information for digital identification systems. Mobilising species descriptions requires manual trait extraction and conversion to a structured format, which can significantly increase time and resource demands. We explored if a large language model (LLM) trained to process unstructured textual data could be used to automate and therefore accelerate the trait extraction pipeline for species identification.

Zenodo (CERN European Organization for Nuclear Research)
Meise Botanic Garden (BE), Royal Botanic Gardens, Kew (GB)
Openalex Percentile: Top 91%
Species Distribution and Climate Change
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