Can protein expression be "solved"?

Recombinant protein expression is central to biotechnology’s application in academic exploration as well as human health, climate applications and the bioeconomy in general. However, not all proteins can be expressed in all organisms, and the field lacks a predictive model of soluble protein overexpression that could replace laborious experimental trial-and-error. Here, we discuss the state of the field and identify the lack of large, high-fidelity datasets as the primary bottleneck to progress. We review possible assays that could be used for data collection to identify a path toward an extensible experimental platform for collecting soluble recombinant protein overexpression data across organisms. We suggest that the resulting dataset should be used to train increasingly generalizable predictive models of protein expression to answer the question: “How can predictive protein expression be solved?”.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-10-16
DOI
https://doi.org/10.5281/zenodo.13940345
Primary Topic
Protein purification and stability
Type
article
Field-Weighted Citation Impact
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article

Can protein expression be "solved"?

Zenodo (CERN European Organization for Nuclear Research)
Protein purification and stability
article

Can protein expression be "solved"?

article en

Abstract

Recombinant protein expression is central to biotechnology’s application in academic exploration as well as human health, climate applications and the bioeconomy in general. However, not all proteins can be expressed in all organisms, and the field lacks a predictive model of soluble protein overexpression that could replace laborious experimental trial-and-error. Here, we discuss the state of the field and identify the lack of large, high-fidelity datasets as the primary bottleneck to progress. We review possible assays that could be used for data collection to identify a path toward an extensible experimental platform for collecting soluble recombinant protein overexpression data across organisms. We suggest that the resulting dataset should be used to train increasingly generalizable predictive models of protein expression to answer the question: “How can predictive protein expression be solved?”.

Zenodo (CERN European Organization for Nuclear Research)
Lawrence Berkeley National Laboratory (US), University of Ljubljana (SI), University of California, San Francisco (US), Align Technology (United States) (US), The Align Foundation (US), Joint BioEnergy Institute (US), Friedrich Miescher Institute (CH), Stanford University (US), University of Edinburgh (GB)
Climate action
Openalex Percentile: Top 75%
Protein purification and stability
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Can protein expression be "solved"? · Zenodo (CERN European Organization for Nuclear Research) (2024) | TGRS Research Map | TGRS