The effect of coffee husks used as pellet bedding material on the intestinal barrier, immune-related gene expression and microbiota composition in the broiler chicken caecum

Abstract Introduction Using coffee husks as waste material for bedding contributes to sustainable development. A sustainable choice of bedding has also, however, to be a safe choice for poultry. The study analysed immune-related gene expression in the intestinal mucosa and indicator bacteria in caecal content collected from broiler chickens bedded on material with coffee husk addition. Material and Methods One-day-old Ross 308 chickens were divided into four groups of 10 birds each in five replicates: C, the control group kept on wheat straw bedding; CH10, a group kept on bedding of 10% coffee husks and 90% wheat straw; CH25, a group kept on bedding of 25% husks and 75% straw; and CH50, a group kept on bedding of 50% husks and 50% straw. After 42 days, the birds were slaughtered, the caecal mucosae were removed for RNA isolation and the caecal content was collected for bacterial DNA isolation. The expression of genes involved in intestinal immune response and host organism defence and the relative abundance of indicator bacteria were analysed. Results Upregulation of the expression of genes related to the immune response and intestinal tightness was correlated with an increase in the percentage of coffee husks in the pellet. Coffee husk pellets at 50% bedding content caused a significant numerical increase in Bifidobacterium and a statistically significant increase in Lactobacillus. A significant reduction in E. coli bacteria was also demonstrated in this group. Coffee husk pellets at all content percentages resulted in a statistically significant diminution of the level of Streptococcus bacteria. Conclusion The addition of coffee husks to poultry litter effects beneficial changes in the expression of genes related to intestinal health and the caecal bacterial profile.